Analysis of interatomic Contacts of Structural Units in PDB entry:
11WD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 11WD entry

There are 4 chains in PDB entry 11WD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 10	LEU 1207
B	ASN 10	THR 1208
C	ASN 10	LEU 1207
D	ASN 10	THR 1208

There are128 helices in PDB entry 11WD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	36	Right-handed alpha
Helix 2	AA2	A	54	68	Right-handed alpha
Helix 3	AA3	A	81	93	Right-handed alpha
Helix 4	AA4	A	120	129	Right-handed alpha
Helix 5	AA5	A	143	154	Right-handed alpha
Helix 6	AA6	A	172	185	Right-handed alpha
Helix 7	AA7	A	197	212	Right-handed alpha
Helix 8	AA8	A	252	264	Right-handed alpha
Helix 9	AA9	A	279	303	Right-handed alpha
Helix 10	AB1	A	325	335	Right-handed alpha
Helix 11	AB2	A	423	437	Right-handed alpha
Helix 12	AB3	A	461	469	Right-handed alpha
Helix 13	AB4	A	527	535	Right-handed alpha
Helix 14	AB5	A	538	543	Right-handed alpha
Helix 15	AB6	A	547	551	Right-handed 310
Helix 16	AB7	A	578	583	Right-handed alpha
Helix 17	AB8	A	596	613	Right-handed alpha
Helix 18	AB9	A	616	621	Right-handed alpha
Helix 19	AC1	A	635	642	Right-handed alpha
Helix 20	AC2	A	664	676	Right-handed alpha
Helix 21	AC3	A	685	695	Right-handed alpha
Helix 22	AC4	A	708	713	Right-handed alpha
Helix 23	AC5	A	742	754	Right-handed alpha
Helix 24	AC6	A	759	767	Right-handed alpha
Helix 25	AC7	A	794	820	Right-handed alpha
Helix 26	AC8	A	1007	1029	Right-handed alpha
Helix 27	AC9	A	1092	1104	Right-handed alpha
Helix 28	AD1	A	1104	1122	Right-handed alpha
Helix 29	AD2	A	1131	1157	Right-handed alpha
Helix 30	AD3	A	1178	1203	Right-handed alpha
Helix 31	AD4	B	23	36	Right-handed alpha
Helix 32	AD5	B	54	69	Right-handed alpha
Helix 33	AD6	B	78	80	Right-handed 310
Helix 34	AD7	B	81	90	Right-handed alpha
Helix 35	AD8	B	117	129	Right-handed alpha
Helix 36	AD9	B	145	151	Right-handed alpha
Helix 37	AE1	B	172	177	Right-handed alpha
Helix 38	AE2	B	177	182	Right-handed alpha
Helix 39	AE3	B	197	205	Right-handed alpha
Helix 40	AE4	B	205	210	Right-handed alpha
Helix 41	AE5	B	252	264	Right-handed alpha
Helix 42	AE6	B	279	302	Right-handed alpha
Helix 43	AE7	B	325	333	Right-handed alpha
Helix 44	AE8	B	423	432	Right-handed alpha
Helix 45	AE9	B	482	489	Right-handed alpha
Helix 46	AF1	B	522	527	Right-handed alpha
Helix 47	AF2	B	530	535	Right-handed alpha
Helix 48	AF3	B	538	545	Right-handed alpha
Helix 49	AF4	B	575	583	Right-handed alpha
Helix 50	AF5	B	612	620	Right-handed alpha
Helix 51	AF6	B	635	639	Right-handed 310
Helix 52	AF7	B	653	662	Right-handed alpha
Helix 53	AF8	B	669	675	Right-handed alpha
Helix 54	AF9	B	685	694	Right-handed alpha
Helix 55	AG1	B	709	715	Right-handed alpha
Helix 56	AG2	B	742	757	Right-handed alpha
Helix 57	AG3	B	761	765	Right-handed 310
Helix 58	AG4	B	794	807	Right-handed alpha
Helix 59	AG5	B	807	816	Right-handed alpha
Helix 60	AG6	B	1010	1029	Right-handed alpha
Helix 61	AG7	B	1094	1104	Right-handed alpha
Helix 62	AG8	B	1104	1123	Right-handed alpha
Helix 63	AG9	B	1131	1161	Right-handed alpha
Helix 64	AH1	B	1183	1207	Right-handed alpha
Helix 65	AH2	C	22	36	Right-handed alpha
Helix 66	AH3	C	54	68	Right-handed alpha
Helix 67	AH4	C	81	93	Right-handed alpha
Helix 68	AH5	C	120	129	Right-handed alpha
Helix 69	AH6	C	143	154	Right-handed alpha
Helix 70	AH7	C	172	185	Right-handed alpha
Helix 71	AH8	C	197	212	Right-handed alpha
Helix 72	AH9	C	252	264	Right-handed alpha
Helix 73	AI1	C	279	303	Right-handed alpha
Helix 74	AI2	C	325	335	Right-handed alpha
Helix 75	AI3	C	423	437	Right-handed alpha
Helix 76	AI4	C	461	469	Right-handed alpha
Helix 77	AI5	C	527	535	Right-handed alpha
Helix 78	AI6	C	538	543	Right-handed alpha
Helix 79	AI7	C	547	551	Right-handed 310
Helix 80	AI8	C	578	583	Right-handed alpha
Helix 81	AI9	C	596	613	Right-handed alpha
Helix 82	AJ1	C	616	621	Right-handed alpha
Helix 83	AJ2	C	635	642	Right-handed alpha
Helix 84	AJ3	C	664	676	Right-handed alpha
Helix 85	AJ4	C	685	695	Right-handed alpha
Helix 86	AJ5	C	708	713	Right-handed alpha
Helix 87	AJ6	C	742	754	Right-handed alpha
Helix 88	AJ7	C	759	767	Right-handed alpha
Helix 89	AJ8	C	794	820	Right-handed alpha
Helix 90	AJ9	C	1007	1029	Right-handed alpha
Helix 91	AK1	C	1092	1104	Right-handed alpha
Helix 92	AK2	C	1104	1122	Right-handed alpha
Helix 93	AK3	C	1131	1157	Right-handed alpha
Helix 94	AK4	C	1178	1203	Right-handed alpha
Helix 95	AK5	D	23	36	Right-handed alpha
Helix 96	AK6	D	54	69	Right-handed alpha
Helix 97	AK7	D	78	80	Right-handed 310
Helix 98	AK8	D	81	90	Right-handed alpha
Helix 99	AK9	D	117	129	Right-handed alpha
Helix 100	AL1	D	145	151	Right-handed alpha
Helix 101	AL2	D	172	177	Right-handed alpha
Helix 102	AL3	D	177	182	Right-handed alpha
Helix 103	AL4	D	197	205	Right-handed alpha
Helix 104	AL5	D	205	210	Right-handed alpha
Helix 105	AL6	D	252	264	Right-handed alpha
Helix 106	AL7	D	279	302	Right-handed alpha
Helix 107	AL8	D	325	333	Right-handed alpha
Helix 108	AL9	D	423	432	Right-handed alpha
Helix 109	AM1	D	482	489	Right-handed alpha
Helix 110	AM2	D	522	527	Right-handed alpha
Helix 111	AM3	D	530	535	Right-handed alpha
Helix 112	AM4	D	538	545	Right-handed alpha
Helix 113	AM5	D	575	583	Right-handed alpha
Helix 114	AM6	D	612	620	Right-handed alpha
Helix 115	AM7	D	635	639	Right-handed 310
Helix 116	AM8	D	653	662	Right-handed alpha
Helix 117	AM9	D	669	675	Right-handed alpha
Helix 118	AN1	D	685	694	Right-handed alpha
Helix 119	AN2	D	709	715	Right-handed alpha
Helix 120	AN3	D	742	757	Right-handed alpha
Helix 121	AN4	D	761	765	Right-handed 310
Helix 122	AN5	D	794	807	Right-handed alpha
Helix 123	AN6	D	807	816	Right-handed alpha
Helix 124	AN7	D	1010	1029	Right-handed alpha
Helix 125	AN8	D	1094	1104	Right-handed alpha
Helix 126	AN9	D	1104	1123	Right-handed alpha
Helix 127	AO1	D	1131	1161	Right-handed alpha
Helix 128	AO2	D	1183	1207	Right-handed alpha

There are 28 sheets in PDB entry 11WD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	16	first strand
Strand 2	A	73	74	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	98	first strand
Strand 2	A	111	112	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	225	first strand
Strand 2	A	243	246	parallel
Strand 3	A	358	363	anti-parallel
Strand 4	A	368	374	anti-parallel
Strand 5	A	381	382	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	502	504	first strand
Strand 2	A	721	723	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1033	1036	first strand
Strand 2	A	1057	1060	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	B	14	15	parallel
Strand 3	B	72	73	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	19	first strand
Strand 2	B	49	50	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	110	112	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	164	first strand
Strand 2	B	134	137	parallel
Strand 3	B	192	194	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	246	first strand
Strand 2	B	358	364	anti-parallel
Strand 3	B	367	374	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	343	344	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	476	479	first strand
Strand 2	B	733	736	anti-parallel
Strand 3	B	490	492	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	648	first strand
Strand 2	B	700	704	parallel
Strand 3	B	500	503	anti-parallel
Strand 4	B	723	727	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1076	1078	first strand
Strand 2	B	1064	1067	anti-parallel
Strand 3	B	1058	1059	anti-parallel
Strand 4	B	1033	1035	anti-parallel
Strand 5	B	1174	1175	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	16	first strand
Strand 2	C	73	74	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	98	first strand
Strand 2	C	111	112	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	225	first strand
Strand 2	C	243	246	parallel
Strand 3	C	358	363	anti-parallel
Strand 4	C	368	374	anti-parallel
Strand 5	C	381	382	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	502	504	first strand
Strand 2	C	721	723	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1033	1036	first strand
Strand 2	C	1057	1060	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	46	first strand
Strand 2	D	14	15	parallel
Strand 3	D	72	73	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	19	first strand
Strand 2	D	49	50	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	98	first strand
Strand 2	D	110	112	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	164	first strand
Strand 2	D	134	137	parallel
Strand 3	D	192	194	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	246	first strand
Strand 2	D	358	364	anti-parallel
Strand 3	D	367	374	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	340	first strand
Strand 2	D	343	344	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	476	479	first strand
Strand 2	D	733	736	anti-parallel
Strand 3	D	490	492	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	648	first strand
Strand 2	D	700	704	parallel
Strand 3	D	500	503	anti-parallel
Strand 4	D	723	727	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1076	1078	first strand
Strand 2	D	1064	1067	anti-parallel
Strand 3	D	1058	1059	anti-parallel
Strand 4	D	1033	1035	anti-parallel
Strand 5	D	1174	1175	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 11WD

Analysis of interatomic Contacts of Structural Units in PDB entry:
11WD