Analysis of interatomic Contacts of Structural Units in PDB entry:
11WQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 11WQ entry

There is 1 chain in PDB entry 11WQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 6LYS 661
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 11WQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 21Right-handed alpha
Helix 2
AA2
A
31 45Right-handed alpha
Helix 3
AA3
A
45 58Right-handed alpha
Helix 4
AA4
A
86 92Right-handed alpha
Helix 5
AA5
A
92 99Right-handed alpha
Helix 6
AA6
A
120 138Right-handed alpha
Helix 7
AA7
A
152 165Right-handed alpha
Helix 8
AA8
A
177 189Right-handed alpha
Helix 9
AA9
A
208 217Right-handed alpha
Helix 10
AB1
A
249 253Right-handed 310
Helix 11
AB2
A
288 301Right-handed alpha
Helix 12
AB3
A
318 325Right-handed alpha
Helix 13
AB4
A
326 333Right-handed alpha
Helix 14
AB5
A
349 359Right-handed alpha
Helix 15
AB6
A
366 377Right-handed alpha
Helix 16
AB7
A
378 382Right-handed 310
Helix 17
AB8
A
399 410Right-handed alpha
Helix 18
AB9
A
490 499Right-handed alpha
Helix 19
AC1
A
538 548Right-handed alpha
Helix 20
AC2
A
582 597Right-handed alpha
Helix 21
AC3
A
621 630Right-handed alpha
Helix 22
AC4
A
646 661Right-handed alpha
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There are 9 sheets in PDB entry 11WQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 71first strand
Strand 2
A
76 79anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 119first strand
Strand 2
A
103 108anti-parallel
Strand 3
A
335 339parallel
Strand 4
A
309 312parallel
Strand 5
A
362 364parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 171first strand
Strand 2
A
144 148parallel
Strand 3
A
192 196parallel
Strand 4
A
224 228parallel
Strand 5
A
243 245parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
204 207anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 272first strand
Strand 2
A
282 284anti-parallel
Strand 3
A
486 487anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 393first strand
Strand 2
A
416 419parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 457first strand
Strand 2
A
470 476anti-parallel
Strand 3
A
506 514anti-parallel
Strand 4
A
520 525anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
530 532first strand
Strand 2
A
535 537anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
552 561first strand
Strand 2
A
567 575anti-parallel
Strand 3
A
605 607parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il