Analysis of interatomic Contacts of Structural Units in PDB entry:
11YB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 11YB entry

There are 4 chains in PDB entry 11YB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 1	ARG 957
B	GLY 1	GLY 690
H	GLU 1	THR 116
L	LEU 2	LYS 106

There are 29 helices in PDB entry 11YB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	151	158	Right-handed alpha
Helix 2	AA2	A	187	192	Right-handed alpha
Helix 3	AA3	A	200	206	Right-handed alpha
Helix 4	AA4	A	227	231	Right-handed 310
Helix 5	AA5	A	259	264	Right-handed alpha
Helix 6	AA6	A	554	558	Right-handed 310
Helix 7	AA7	A	910	916	Right-handed alpha
Helix 8	AA8	B	12	17	Right-handed alpha
Helix 9	AA9	B	40	47	Right-handed alpha
Helix 10	AB1	B	76	80	Right-handed 310
Helix 11	AB2	B	121	123	Right-handed 310
Helix 12	AB3	B	124	129	Right-handed alpha
Helix 13	AB4	B	133	144	Right-handed alpha
Helix 14	AB5	B	169	174	Right-handed 310
Helix 15	AB6	B	199	207	Right-handed alpha
Helix 16	AB7	B	221	232	Right-handed alpha
Helix 17	AB8	B	232	237	Right-handed alpha
Helix 18	AB9	B	259	263	Right-handed 310
Helix 19	AC1	B	281	286	Right-handed 310
Helix 20	AC2	B	291	302	Right-handed alpha
Helix 21	AC3	B	311	325	Right-handed alpha
Helix 22	AC4	B	339	352	Right-handed alpha
Helix 23	AC5	B	435	440	Right-handed 310
Helix 24	AC6	B	493	498	Right-handed 310
Helix 25	AC7	B	534	539	Right-handed 310
Helix 26	AC8	B	573	578	Right-handed 310
Helix 27	AC9	B	606	617	Right-handed alpha
Helix 28	AD1	H	64	66	Right-handed 310
Helix 29	AD2	L	48	52	Right-handed 310

There are 32 sheets in PDB entry 11YB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	444	448	anti-parallel
Strand 3	A	435	439	anti-parallel
Strand 4	A	420	422	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	27	first strand
Strand 2	A	33	39	anti-parallel
Strand 3	A	52	56	anti-parallel
Strand 4	A	67	68	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	79	first strand
Strand 2	A	82	87	anti-parallel
Strand 3	A	112	117	anti-parallel
Strand 4	A	120	121	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	100	first strand
Strand 2	A	103	108	anti-parallel
Strand 3	A	129	134	anti-parallel
Strand 4	A	139	143	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	175	first strand
Strand 2	A	180	185	anti-parallel
Strand 3	A	194	199	anti-parallel
Strand 4	A	220	221	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	242	first strand
Strand 2	A	252	257	anti-parallel
Strand 3	A	266	270	anti-parallel
Strand 4	A	276	281	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	296	first strand
Strand 2	A	305	310	anti-parallel
Strand 3	A	327	331	anti-parallel
Strand 4	A	345	348	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	315	first strand
Strand 2	A	323	324	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	362	first strand
Strand 2	A	373	378	anti-parallel
Strand 3	A	388	393	anti-parallel
Strand 4	A	405	407	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	523	first strand
Strand 2	A	544	552	anti-parallel
Strand 3	A	484	494	anti-parallel
Strand 4	A	453	462	anti-parallel
Strand 5	A	585	588	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	465	466	first strand
Strand 2	A	591	598	parallel
Strand 3	A	565	572	anti-parallel
Strand 4	A	503	510	anti-parallel
Strand 5	A	530	536	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	481	482	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	612	619	first strand
Strand 2	A	629	639	anti-parallel
Strand 3	A	698	707	anti-parallel
Strand 4	A	659	664	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	674	678	first strand
Strand 2	A	683	690	anti-parallel
Strand 3	A	647	652	anti-parallel
Strand 4	A	716	724	anti-parallel
Strand 5	A	736	741	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	749	755	first strand
Strand 2	A	779	787	anti-parallel
Strand 3	A	900	909	anti-parallel
Strand 4	A	813	821	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	758	760	first strand
Strand 2	A	949	956	parallel
Strand 3	A	922	931	anti-parallel
Strand 4	A	794	804	anti-parallel
Strand 5	A	885	895	anti-parallel
Strand 6	A	825	829	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	758	760	first strand
Strand 2	A	949	956	parallel
Strand 3	A	922	931	anti-parallel
Strand 4	A	877	878	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	26	first strand
Strand 2	B	54	55	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	65	first strand
Strand 2	B	87	92	anti-parallel
Strand 3	B	425	431	parallel
Strand 4	B	412	417	anti-parallel
Strand 5	B	358	360	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	84	first strand
Strand 2	B	97	105	anti-parallel
Strand 3	B	394	403	anti-parallel
Strand 4	B	366	373	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	151	first strand
Strand 2	B	112	115	parallel
Strand 3	B	243	250	parallel
Strand 4	B	304	310	parallel
Strand 5	B	328	332	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	119	first strand
Strand 2	B	155	156	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	355	first strand
Strand 2	B	386	387	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	456	first strand
Strand 2	B	459	461	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	500	502	first strand
Strand 2	B	505	507	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	516	517	first strand
Strand 2	B	523	524	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	553	554	first strand
Strand 2	B	560	561	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	580	582	first strand
Strand 2	B	585	587	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	78	84	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	113	116	parallel
Strand 3	H	93	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	47	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	12	first strand
Strand 2	L	101	105	parallel
Strand 3	L	83	88	anti-parallel
Strand 4	L	33	37	anti-parallel
Strand 5	L	44	45	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	64	65	first strand
Strand 2	L	70	71	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 11YB

Analysis of interatomic Contacts of Structural Units in PDB entry:
11YB