Analysis of interatomic Contacts of Structural Units in PDB entry:
11ZK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 11ZK entry

There are 4 chains in PDB entry 11ZK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLY 83	PHE 87
A	ALA 59	LYS 523
B	ILE 17	GLN 456
D	THR 5	GLN 456

There are 47 helices in PDB entry 11ZK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	65	Right-handed alpha
Helix 2	AA2	A	81	87	Right-handed alpha
Helix 3	AA3	A	125	137	Right-handed alpha
Helix 4	AA4	A	160	169	Right-handed alpha
Helix 5	AA5	A	193	198	Right-handed alpha
Helix 6	AA6	A	199	202	Right-handed 310
Helix 7	AA7	A	226	231	Right-handed alpha
Helix 8	AA8	A	271	282	Right-handed alpha
Helix 9	AA9	A	293	305	Right-handed alpha
Helix 10	AB1	A	310	328	Right-handed alpha
Helix 11	AB2	A	330	338	Right-handed alpha
Helix 12	AB3	A	353	363	Right-handed alpha
Helix 13	AB4	A	449	459	Right-handed alpha
Helix 14	AB5	A	494	512	Right-handed alpha
Helix 15	AB6	A	513	518	Right-handed 310
Helix 16	AB7	B	24	35	Right-handed alpha
Helix 17	AB8	B	50	61	Right-handed alpha
Helix 18	AB9	B	145	161	Right-handed alpha
Helix 19	AC1	B	179	194	Right-handed alpha
Helix 20	AC2	B	224	230	Right-handed alpha
Helix 21	AC3	B	245	257	Right-handed alpha
Helix 22	AC4	B	268	284	Right-handed alpha
Helix 23	AC5	B	288	306	Right-handed alpha
Helix 24	AC6	B	307	310	Right-handed 310
Helix 25	AC7	B	319	334	Right-handed alpha
Helix 26	AC8	B	347	357	Right-handed alpha
Helix 27	AC9	B	371	382	Right-handed alpha
Helix 28	AD1	B	390	392	Right-handed 310
Helix 29	AD2	B	393	400	Right-handed alpha
Helix 30	AD3	B	423	447	Right-handed alpha
Helix 31	AD4	B	448	452	Right-handed 310
Helix 32	AD5	D	24	33	Right-handed alpha
Helix 33	AD6	D	46	60	Right-handed alpha
Helix 34	AD7	D	84	87	Right-handed 310
Helix 35	AD8	D	88	95	Right-handed alpha
Helix 36	AD9	D	105	112	Right-handed alpha
Helix 37	AE1	D	145	158	Right-handed alpha
Helix 38	AE2	D	182	194	Right-handed alpha
Helix 39	AE3	D	241	256	Right-handed alpha
Helix 40	AE4	D	268	283	Right-handed alpha
Helix 41	AE5	D	288	305	Right-handed alpha
Helix 42	AE6	D	305	310	Right-handed alpha
Helix 43	AE7	D	319	334	Right-handed alpha
Helix 44	AE8	D	348	358	Right-handed alpha
Helix 45	AE9	D	370	374	Right-handed 310
Helix 46	AF1	D	393	401	Right-handed alpha
Helix 47	AF2	D	423	447	Right-handed alpha

There are 8 sheets in PDB entry 11ZK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	75	78	parallel
Strand 3	A	143	144	parallel
Strand 4	A	173	174	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	244	first strand
Strand 2	A	214	218	parallel
Strand 3	A	263	265	parallel
Strand 4	A	286	288	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	344	first strand
Strand 2	A	366	367	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	199	first strand
Strand 2	B	171	174	parallel
Strand 3	B	237	239	parallel
Strand 4	B	260	261	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	368	first strand
Strand 2	B	336	342	parallel
Strand 3	B	313	317	parallel
Strand 4	B	386	389	parallel
Strand 5	B	404	406	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	68	first strand
Strand 2	D	41	43	parallel
Strand 3	D	102	104	parallel
Strand 4	D	136	137	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	197	199	first strand
Strand 2	D	171	174	parallel
Strand 3	D	236	239	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	339	first strand
Strand 2	D	314	317	parallel
Strand 3	D	386	389	parallel
Strand 4	D	404	405	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 11ZK

Analysis of interatomic Contacts of Structural Units in PDB entry:
11ZK