Analysis of interatomic Contacts of Structural Units in PDB entry:
12AJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 12AJ entry

There are 2 chains in PDB entry 12AJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ILE 10GLU 219
A
 GLY 161GLN 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 12AJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
16 22Right-handed alpha
Helix 2
AA2
B
23 28Right-handed alpha
Helix 3
AA3
B
33 53Right-handed alpha
Helix 4
AA4
B
89 97Right-handed alpha
Helix 5
AA5
B
119 126Right-handed alpha
Helix 6
AA6
B
183 198Right-handed alpha
Helix 7
AA7
A
182 194Right-handed alpha
Helix 8
AA8
A
200 205Right-handed alpha
Helix 9
AA9
A
210 223Right-handed alpha
Helix 10
AB1
A
232 234Right-handed 310
Helix 11
AB2
A
235 242Right-handed alpha
Helix 12
AB3
A
285 291Right-handed alpha
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There are 3 sheets in PDB entry 12AJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
139 146anti-parallel
Strand 3
B
155 159anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
139 146anti-parallel
Strand 3
B
127 136anti-parallel
Strand 4
B
164 171anti-parallel
Strand 5
B
69 73anti-parallel
Strand 6
B
58 63anti-parallel
Strand 7
B
202 207parallel
Strand 8
B
213 216anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 170first strand
Strand 2
A
280 284anti-parallel
Strand 3
A
271 275anti-parallel
Strand 4
A
258 265anti-parallel
Strand 5
A
245 249anti-parallel
Strand 6
A
293 299anti-parallel
Strand 7
A
227 230anti-parallel
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