Analysis of interatomic Contacts of Structural Units in PDB entry:
12BI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 12BI entry

There are 6 chains in PDB entry 12BI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	MET 1	PHE 396
E	GLY -1	PHE 396
B	MET 1	PHE 396
C	LEU -5	PHE 396
A	MET 1	PHE 396
F	LEU -5	PHE 396

There are 85 helices in PDB entry 12BI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	13	25	Right-handed alpha
Helix 2	AA2	D	27	37	Right-handed alpha
Helix 3	AA3	D	72	82	Right-handed alpha
Helix 4	AA4	D	86	109	Right-handed alpha
Helix 5	AA5	D	111	115	Right-handed 310
Helix 6	AA6	D	122	139	Right-handed alpha
Helix 7	AA7	D	168	174	Right-handed alpha
Helix 8	AA8	D	190	201	Right-handed alpha
Helix 9	AA9	D	259	261	Right-handed 310
Helix 10	AB1	D	262	273	Right-handed alpha
Helix 11	AB2	D	286	288	Right-handed 310
Helix 12	AB3	D	302	314	Right-handed alpha
Helix 13	AB4	D	364	376	Right-handed alpha
Helix 14	AB5	D	378	394	Right-handed alpha
Helix 15	AB6	E	13	24	Right-handed alpha
Helix 16	AB7	E	27	36	Right-handed alpha
Helix 17	AB8	E	37	39	Right-handed 310
Helix 18	AB9	E	72	82	Right-handed alpha
Helix 19	AC1	E	86	109	Right-handed alpha
Helix 20	AC2	E	111	115	Right-handed 310
Helix 21	AC3	E	122	139	Right-handed alpha
Helix 22	AC4	E	167	174	Right-handed alpha
Helix 23	AC5	E	190	201	Right-handed alpha
Helix 24	AC6	E	259	261	Right-handed 310
Helix 25	AC7	E	262	273	Right-handed alpha
Helix 26	AC8	E	285	289	Right-handed 310
Helix 27	AC9	E	299	301	Right-handed 310
Helix 28	AD1	E	302	313	Right-handed alpha
Helix 29	AD2	E	364	376	Right-handed alpha
Helix 30	AD3	E	378	395	Right-handed alpha
Helix 31	AD4	B	13	25	Right-handed alpha
Helix 32	AD5	B	27	37	Right-handed alpha
Helix 33	AD6	B	72	82	Right-handed alpha
Helix 34	AD7	B	86	109	Right-handed alpha
Helix 35	AD8	B	122	139	Right-handed alpha
Helix 36	AD9	B	167	175	Right-handed alpha
Helix 37	AE1	B	190	201	Right-handed alpha
Helix 38	AE2	B	259	261	Right-handed 310
Helix 39	AE3	B	262	273	Right-handed alpha
Helix 40	AE4	B	299	301	Right-handed 310
Helix 41	AE5	B	302	313	Right-handed alpha
Helix 42	AE6	B	364	376	Right-handed alpha
Helix 43	AE7	B	378	395	Right-handed alpha
Helix 44	AE8	C	13	24	Right-handed alpha
Helix 45	AE9	C	27	37	Right-handed alpha
Helix 46	AF1	C	72	82	Right-handed alpha
Helix 47	AF2	C	86	109	Right-handed alpha
Helix 48	AF3	C	111	115	Right-handed 310
Helix 49	AF4	C	122	139	Right-handed alpha
Helix 50	AF5	C	167	174	Right-handed alpha
Helix 51	AF6	C	190	200	Right-handed alpha
Helix 52	AF7	C	259	261	Right-handed 310
Helix 53	AF8	C	262	274	Right-handed alpha
Helix 54	AF9	C	299	301	Right-handed 310
Helix 55	AG1	C	302	314	Right-handed alpha
Helix 56	AG2	C	364	376	Right-handed alpha
Helix 57	AG3	C	378	395	Right-handed alpha
Helix 58	AG4	A	13	24	Right-handed alpha
Helix 59	AG5	A	27	35	Right-handed alpha
Helix 60	AG6	A	36	39	Right-handed 310
Helix 61	AG7	A	72	82	Right-handed alpha
Helix 62	AG8	A	86	109	Right-handed alpha
Helix 63	AG9	A	122	139	Right-handed alpha
Helix 64	AH1	A	169	174	Right-handed alpha
Helix 65	AH2	A	190	201	Right-handed alpha
Helix 66	AH3	A	259	261	Right-handed 310
Helix 67	AH4	A	262	273	Right-handed alpha
Helix 68	AH5	A	286	288	Right-handed 310
Helix 69	AH6	A	302	313	Right-handed alpha
Helix 70	AH7	A	364	376	Right-handed alpha
Helix 71	AH8	A	378	395	Right-handed alpha
Helix 72	AH9	F	13	24	Right-handed alpha
Helix 73	AI1	F	27	36	Right-handed alpha
Helix 74	AI2	F	37	39	Right-handed 310
Helix 75	AI3	F	72	82	Right-handed alpha
Helix 76	AI4	F	86	109	Right-handed alpha
Helix 77	AI5	F	122	139	Right-handed alpha
Helix 78	AI6	F	167	174	Right-handed alpha
Helix 79	AI7	F	190	201	Right-handed alpha
Helix 80	AI8	F	259	261	Right-handed 310
Helix 81	AI9	F	262	274	Right-handed alpha
Helix 82	AJ1	F	286	288	Right-handed 310
Helix 83	AJ2	F	302	314	Right-handed alpha
Helix 84	AJ3	F	364	376	Right-handed alpha
Helix 85	AJ4	F	378	395	Right-handed alpha

There are 32 sheets in PDB entry 12BI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	204	first strand
Strand 2	D	143	146	parallel
Strand 3	D	2	6	parallel
Strand 4	D	230	236	anti-parallel
Strand 5	D	209	218	anti-parallel
Strand 6	E	178	181	anti-parallel
Strand 7	E	149	151	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	52	first strand
Strand 2	D	55	61	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	151	first strand
Strand 2	D	179	181	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	278	first strand
Strand 2	D	290	297	anti-parallel
Strand 3	D	247	255	anti-parallel
Strand 4	D	319	327	anti-parallel
Strand 5	E	319	324	anti-parallel
Strand 6	E	248	255	anti-parallel
Strand 7	E	292	298	anti-parallel
Strand 8	E	277	282	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	284	first strand
Strand 2	D	290	297	anti-parallel
Strand 3	D	247	255	anti-parallel
Strand 4	D	319	327	anti-parallel
Strand 5	F	325	327	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	330	337	first strand
Strand 2	D	342	349	anti-parallel
Strand 3	D	361	363	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	203	204	first strand
Strand 2	E	144	146	parallel
Strand 3	E	1	7	parallel
Strand 4	E	231	237	anti-parallel
Strand 5	E	210	216	anti-parallel
Strand 6	F	178	181	anti-parallel
Strand 7	F	149	151	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	52	first strand
Strand 2	E	55	64	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	154	158	first strand
Strand 2	E	161	165	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	327	328	first strand
Strand 2	F	318	323	anti-parallel
Strand 3	F	248	255	anti-parallel
Strand 4	F	290	299	anti-parallel
Strand 5	F	277	279	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	327	328	first strand
Strand 2	F	318	323	anti-parallel
Strand 3	F	248	255	anti-parallel
Strand 4	F	290	299	anti-parallel
Strand 5	F	282	284	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	330	338	first strand
Strand 2	E	341	351	anti-parallel
Strand 3	E	357	363	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	204	first strand
Strand 2	B	143	146	parallel
Strand 3	B	2	7	parallel
Strand 4	B	231	236	anti-parallel
Strand 5	B	210	217	anti-parallel
Strand 6	C	178	181	anti-parallel
Strand 7	C	149	151	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	51	first strand
Strand 2	B	56	64	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	151	first strand
Strand 2	B	179	181	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	158	first strand
Strand 2	B	161	164	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	328	first strand
Strand 2	C	318	323	anti-parallel
Strand 3	C	249	255	anti-parallel
Strand 4	C	290	297	anti-parallel
Strand 5	C	282	285	anti-parallel
Strand 6	B	277	285	anti-parallel
Strand 7	C	277	279	first strand

Back to list of sheets
Back to top of page

There are 13 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	328	first strand
Strand 2	C	318	323	anti-parallel
Strand 3	C	249	255	anti-parallel
Strand 4	C	290	297	anti-parallel
Strand 5	A	277	284	first strand
Strand 6	A	290	298	anti-parallel
Strand 7	A	248	255	anti-parallel
Strand 8	A	320	328	anti-parallel
Strand 9	B	318	323	anti-parallel
Strand 10	B	249	255	anti-parallel
Strand 11	B	290	298	anti-parallel
Strand 12	B	277	285	anti-parallel
Strand 13	C	277	279	first strand

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	338	first strand
Strand 2	B	341	351	anti-parallel
Strand 3	B	357	363	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	146	first strand
Strand 2	C	3	7	parallel
Strand 3	C	231	236	anti-parallel
Strand 4	C	211	217	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	51	first strand
Strand 2	C	56	64	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	157	first strand
Strand 2	C	162	164	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	330	338	first strand
Strand 2	C	341	351	anti-parallel
Strand 3	C	357	363	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	204	first strand
Strand 2	A	143	146	parallel
Strand 3	A	2	7	parallel
Strand 4	A	229	236	anti-parallel
Strand 5	A	211	219	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	52	first strand
Strand 2	A	55	64	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	153	first strand
Strand 2	A	179	185	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	338	first strand
Strand 2	A	341	351	anti-parallel
Strand 3	A	357	361	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	143	146	first strand
Strand 2	F	1	7	parallel
Strand 3	F	231	233	anti-parallel
Strand 4	F	215	216	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	143	146	first strand
Strand 2	F	1	7	parallel
Strand 3	F	235	237	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	48	first strand
Strand 2	F	59	64	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	155	158	first strand
Strand 2	F	161	164	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	330	338	first strand
Strand 2	F	341	351	anti-parallel
Strand 3	F	357	363	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 12BI

Analysis of interatomic Contacts of Structural Units in PDB entry:
12BI