Analysis of interatomic Contacts of Structural Units in PDB entry:
12BJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 12BJ entry

There are 6 chains in PDB entry 12BJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	LEU -5	PHE 396
A	MET 1	PHE 396
B	MET 1	PHE 396
C	PHE -3	PHE 396
F	MET 1	PHE 396
D	MET 1	PHE 396

There are 87 helices in PDB entry 12BJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	13	24	Right-handed alpha
Helix 2	AA2	E	27	36	Right-handed alpha
Helix 3	AA3	E	37	39	Right-handed 310
Helix 4	AA4	E	72	82	Right-handed alpha
Helix 5	AA5	E	86	109	Right-handed alpha
Helix 6	AA6	E	122	139	Right-handed alpha
Helix 7	AA7	E	167	174	Right-handed alpha
Helix 8	AA8	E	190	201	Right-handed alpha
Helix 9	AA9	E	259	261	Right-handed 310
Helix 10	AB1	E	262	273	Right-handed alpha
Helix 11	AB2	E	286	288	Right-handed 310
Helix 12	AB3	E	302	314	Right-handed alpha
Helix 13	AB4	E	364	376	Right-handed alpha
Helix 14	AB5	E	378	395	Right-handed alpha
Helix 15	AB6	A	13	25	Right-handed alpha
Helix 16	AB7	A	27	34	Right-handed alpha
Helix 17	AB8	A	72	83	Right-handed alpha
Helix 18	AB9	A	86	109	Right-handed alpha
Helix 19	AC1	A	111	115	Right-handed 310
Helix 20	AC2	A	122	139	Right-handed alpha
Helix 21	AC3	A	169	174	Right-handed alpha
Helix 22	AC4	A	190	201	Right-handed alpha
Helix 23	AC5	A	259	261	Right-handed 310
Helix 24	AC6	A	262	273	Right-handed alpha
Helix 25	AC7	A	285	289	Right-handed 310
Helix 26	AC8	A	299	301	Right-handed 310
Helix 27	AC9	A	302	314	Right-handed alpha
Helix 28	AD1	A	364	376	Right-handed alpha
Helix 29	AD2	A	378	395	Right-handed alpha
Helix 30	AD3	B	13	24	Right-handed alpha
Helix 31	AD4	B	27	35	Right-handed alpha
Helix 32	AD5	B	36	39	Right-handed 310
Helix 33	AD6	B	72	83	Right-handed alpha
Helix 34	AD7	B	86	109	Right-handed alpha
Helix 35	AD8	B	122	139	Right-handed alpha
Helix 36	AD9	B	167	174	Right-handed alpha
Helix 37	AE1	B	190	201	Right-handed alpha
Helix 38	AE2	B	259	261	Right-handed 310
Helix 39	AE3	B	262	273	Right-handed alpha
Helix 40	AE4	B	286	288	Right-handed 310
Helix 41	AE5	B	299	301	Right-handed 310
Helix 42	AE6	B	302	314	Right-handed alpha
Helix 43	AE7	B	364	376	Right-handed alpha
Helix 44	AE8	B	378	394	Right-handed alpha
Helix 45	AE9	C	13	24	Right-handed alpha
Helix 46	AF1	C	27	36	Right-handed alpha
Helix 47	AF2	C	37	39	Right-handed 310
Helix 48	AF3	C	72	82	Right-handed alpha
Helix 49	AF4	C	86	109	Right-handed alpha
Helix 50	AF5	C	122	139	Right-handed alpha
Helix 51	AF6	C	167	174	Right-handed alpha
Helix 52	AF7	C	190	201	Right-handed alpha
Helix 53	AF8	C	259	261	Right-handed 310
Helix 54	AF9	C	262	274	Right-handed alpha
Helix 55	AG1	C	286	288	Right-handed 310
Helix 56	AG2	C	302	314	Right-handed alpha
Helix 57	AG3	C	364	376	Right-handed alpha
Helix 58	AG4	C	378	396	Right-handed alpha
Helix 59	AG5	F	13	25	Right-handed alpha
Helix 60	AG6	F	27	37	Right-handed alpha
Helix 61	AG7	F	72	82	Right-handed alpha
Helix 62	AG8	F	86	109	Right-handed alpha
Helix 63	AG9	F	111	115	Right-handed 310
Helix 64	AH1	F	122	139	Right-handed alpha
Helix 65	AH2	F	168	174	Right-handed alpha
Helix 66	AH3	F	190	201	Right-handed alpha
Helix 67	AH4	F	259	261	Right-handed 310
Helix 68	AH5	F	262	273	Right-handed alpha
Helix 69	AH6	F	285	289	Right-handed 310
Helix 70	AH7	F	299	301	Right-handed 310
Helix 71	AH8	F	302	313	Right-handed alpha
Helix 72	AH9	F	364	376	Right-handed alpha
Helix 73	AI1	F	378	396	Right-handed alpha
Helix 74	AI2	D	13	25	Right-handed alpha
Helix 75	AI3	D	27	36	Right-handed alpha
Helix 76	AI4	D	37	39	Right-handed 310
Helix 77	AI5	D	72	82	Right-handed alpha
Helix 78	AI6	D	86	109	Right-handed alpha
Helix 79	AI7	D	122	139	Right-handed alpha
Helix 80	AI8	D	167	174	Right-handed alpha
Helix 81	AI9	D	190	201	Right-handed alpha
Helix 82	AJ1	D	259	261	Right-handed 310
Helix 83	AJ2	D	262	273	Right-handed alpha
Helix 84	AJ3	D	286	288	Right-handed 310
Helix 85	AJ4	D	302	313	Right-handed alpha
Helix 86	AJ5	D	364	376	Right-handed alpha
Helix 87	AJ6	D	378	395	Right-handed alpha

There are 33 sheets in PDB entry 12BJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	143	146	first strand
Strand 2	E	1	7	parallel
Strand 3	E	231	237	anti-parallel
Strand 4	E	214	216	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	51	first strand
Strand 2	E	56	64	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	149	151	first strand
Strand 2	E	178	181	parallel
Strand 3	D	210	211	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	154	158	first strand
Strand 2	E	161	165	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	252	255	first strand
Strand 2	E	290	297	anti-parallel
Strand 3	E	277	279	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	252	255	first strand
Strand 2	E	290	297	anti-parallel
Strand 3	E	282	284	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	318	319	first strand
Strand 2	D	327	328	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	325	328	first strand
Strand 2	F	318	328	anti-parallel
Strand 3	F	246	255	anti-parallel
Strand 4	F	292	298	anti-parallel
Strand 5	F	281	282	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	277	278	first strand
Strand 2	F	292	298	anti-parallel
Strand 3	F	246	255	anti-parallel
Strand 4	F	318	328	anti-parallel
Strand 5	D	318	323	anti-parallel
Strand 6	D	248	255	anti-parallel
Strand 7	D	290	297	anti-parallel
Strand 8	D	277	284	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	330	338	first strand
Strand 2	E	341	351	anti-parallel
Strand 3	E	357	361	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	204	first strand
Strand 2	A	141	146	parallel
Strand 3	A	2	7	parallel
Strand 4	A	231	236	anti-parallel
Strand 5	A	210	215	anti-parallel
Strand 6	B	178	181	anti-parallel
Strand 7	B	149	151	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	51	first strand
Strand 2	A	56	62	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	282	first strand
Strand 2	A	292	298	anti-parallel
Strand 3	A	248	255	anti-parallel
Strand 4	A	319	324	anti-parallel
Strand 5	C	325	327	anti-parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	328	first strand
Strand 2	B	318	328	anti-parallel
Strand 3	C	318	323	anti-parallel
Strand 4	C	248	255	anti-parallel
Strand 5	C	290	299	anti-parallel
Strand 6	C	281	284	anti-parallel
Strand 7	B	277	284	anti-parallel
Strand 8	B	290	298	anti-parallel
Strand 9	B	248	255	anti-parallel
Strand 10	B	318	328	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	337	first strand
Strand 2	A	342	351	anti-parallel
Strand 3	A	357	363	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	204	first strand
Strand 2	B	143	146	parallel
Strand 3	B	2	7	parallel
Strand 4	B	231	236	anti-parallel
Strand 5	B	210	217	anti-parallel
Strand 6	C	178	181	anti-parallel
Strand 7	C	149	151	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	51	first strand
Strand 2	B	56	64	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	158	first strand
Strand 2	B	161	165	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	338	first strand
Strand 2	B	341	351	anti-parallel
Strand 3	B	357	358	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	338	first strand
Strand 2	B	341	351	anti-parallel
Strand 3	B	361	363	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	204	first strand
Strand 2	C	143	146	parallel
Strand 3	C	1	7	parallel
Strand 4	C	231	237	anti-parallel
Strand 5	C	211	216	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	51	first strand
Strand 2	C	56	64	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	330	331	first strand
Strand 2	C	341	350	anti-parallel
Strand 3	C	334	338	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	330	331	first strand
Strand 2	C	341	350	anti-parallel
Strand 3	C	358	363	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	203	204	first strand
Strand 2	F	144	146	parallel
Strand 3	F	2	7	parallel
Strand 4	F	229	236	anti-parallel
Strand 5	F	214	219	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	51	first strand
Strand 2	F	56	64	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	149	151	first strand
Strand 2	F	179	181	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	330	338	first strand
Strand 2	F	341	351	anti-parallel
Strand 3	F	357	363	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	204	first strand
Strand 2	D	143	146	parallel
Strand 3	D	2	6	parallel
Strand 4	D	234	236	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	51	first strand
Strand 2	D	56	64	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	151	first strand
Strand 2	D	179	181	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	157	first strand
Strand 2	D	162	165	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	330	338	first strand
Strand 2	D	341	351	anti-parallel
Strand 3	D	357	361	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 12BJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
12BJ