Analysis of interatomic Contacts of Structural Units in PDB entry:
12BN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 12BN entry

There are 24 chains in PDB entry 12BN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	TYR 1	LEU 6
E	PHE 9	LEU 14
E	ARG 16	ARG 16
E	CYS 18	MET 19
E	LYS 22	PHE 25
E	ALA 28	ARG 29
E	VAL 31	PHE 32
E	ASN 34	THR 35
E	ARG 37	THR 39
E	PHE 41	THR 415
F	TYR 1	LEU 6
F	PHE 9	LEU 14
F	ARG 16	ARG 16
F	CYS 18	MET 19
F	LYS 22	PHE 25
F	ALA 28	ARG 29
F	VAL 31	PHE 32
F	ASN 34	THR 35
F	ARG 37	THR 39
F	PHE 41	GLY 48
A	GLU 1	ARG 369
B	ILE 370	GLN 605
C	GLU 1	ARG 369
D	ILE 370	GLN 605

There are 31 helices in PDB entry 12BN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	13	18	Right-handed alpha
Helix 2	AA2	E	24	33	Right-handed alpha
Helix 3	AA3	E	34	46	Right-handed alpha
Helix 4	AA4	E	50	54	Right-handed 310
Helix 5	AA5	E	90	95	Right-handed 310
Helix 6	AA6	E	296	301	Right-handed alpha
Helix 7	AA7	E	332	337	Right-handed alpha
Helix 8	AA8	E	405	412	Right-handed alpha
Helix 9	AA9	F	13	18	Right-handed alpha
Helix 10	AB1	F	24	33	Right-handed alpha
Helix 11	AB2	F	34	46	Right-handed alpha
Helix 12	AB3	A	24	34	Right-handed alpha
Helix 13	AB4	A	114	124	Right-handed alpha
Helix 14	AB5	A	172	176	Right-handed 310
Helix 15	AB6	A	204	215	Right-handed alpha
Helix 16	AB7	A	295	306	Right-handed alpha
Helix 17	AB8	B	411	416	Right-handed 310
Helix 18	AB9	B	420	422	Right-handed 310
Helix 19	AC1	B	432	436	Right-handed 310
Helix 20	AC2	B	523	531	Right-handed alpha
Helix 21	AC3	B	593	605	Right-handed alpha
Helix 22	AC4	C	24	34	Right-handed alpha
Helix 23	AC5	C	114	124	Right-handed alpha
Helix 24	AC6	C	172	176	Right-handed 310
Helix 25	AC7	C	204	215	Right-handed alpha
Helix 26	AC8	C	295	306	Right-handed alpha
Helix 27	AC9	D	412	416	Right-handed 310
Helix 28	AD1	D	420	422	Right-handed 310
Helix 29	AD2	D	432	436	Right-handed 310
Helix 30	AD3	D	523	530	Right-handed alpha
Helix 31	AD4	D	596	605	Right-handed alpha

There are 22 sheets in PDB entry 12BN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	64	first strand
Strand 2	E	69	72	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	100	first strand
Strand 2	E	108	110	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	115	118	first strand
Strand 2	E	123	126	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	196	198	first strand
Strand 2	E	207	210	anti-parallel
Strand 3	E	215	218	anti-parallel
Strand 4	E	271	275	anti-parallel
Strand 5	E	246	255	anti-parallel
Strand 6	E	230	233	anti-parallel
Strand 7	E	196	198	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	326	328	first strand
Strand 2	E	305	307	anti-parallel
Strand 3	E	367	373	anti-parallel
Strand 4	E	376	383	anti-parallel
Strand 5	E	396	400	anti-parallel
Strand 6	E	348	351	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	8	first strand
Strand 2	A	77	80	anti-parallel
Strand 3	A	40	43	anti-parallel
Strand 4	A	58	61	anti-parallel
Strand 5	A	16	20	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	70	71	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	102	first strand
Strand 2	A	160	170	anti-parallel
Strand 3	A	130	134	anti-parallel
Strand 4	A	146	151	anti-parallel
Strand 5	A	105	111	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	188	first strand
Strand 2	A	256	260	anti-parallel
Strand 3	A	220	224	anti-parallel
Strand 4	A	236	241	anti-parallel
Strand 5	A	195	200	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	192	first strand
Strand 2	A	250	251	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	282	first strand
Strand 2	A	342	351	anti-parallel
Strand 3	A	311	314	anti-parallel
Strand 4	A	328	332	anti-parallel
Strand 5	A	286	291	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	428	first strand
Strand 2	B	384	389	anti-parallel
Strand 3	B	395	402	anti-parallel
Strand 4	B	407	410	anti-parallel
Strand 5	B	464	468	anti-parallel
Strand 6	B	445	450	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	517	518	first strand
Strand 2	B	496	498	anti-parallel
Strand 3	B	560	565	anti-parallel
Strand 4	B	568	577	anti-parallel
Strand 5	B	588	592	anti-parallel
Strand 6	B	540	543	anti-parallel
Strand 7	B	521	522	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	8	first strand
Strand 2	C	76	80	anti-parallel
Strand 3	C	40	44	anti-parallel
Strand 4	C	57	61	anti-parallel
Strand 5	C	16	20	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	70	71	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	98	first strand
Strand 2	C	166	170	anti-parallel
Strand 3	C	130	134	anti-parallel
Strand 4	C	146	151	anti-parallel
Strand 5	C	105	111	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	C	160	161	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	188	first strand
Strand 2	C	256	260	anti-parallel
Strand 3	C	220	224	anti-parallel
Strand 4	C	236	241	anti-parallel
Strand 5	C	195	200	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	192	first strand
Strand 2	C	250	251	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	282	first strand
Strand 2	C	342	351	anti-parallel
Strand 3	C	311	314	anti-parallel
Strand 4	C	328	332	anti-parallel
Strand 5	C	286	291	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	424	428	first strand
Strand 2	D	384	389	anti-parallel
Strand 3	D	395	402	anti-parallel
Strand 4	D	407	410	anti-parallel
Strand 5	D	464	468	anti-parallel
Strand 6	D	445	450	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	517	518	first strand
Strand 2	D	495	498	anti-parallel
Strand 3	D	560	565	anti-parallel
Strand 4	D	568	575	anti-parallel
Strand 5	D	588	592	anti-parallel
Strand 6	D	540	543	anti-parallel
Strand 7	D	521	522	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 12BN

Analysis of interatomic Contacts of Structural Units in PDB entry:
12BN