Analysis of interatomic Contacts of Structural Units in PDB entry:
12JP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 12JP entry

There is 1 chain in PDB entry 12JP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	ASP 2330

There are 22 helices in PDB entry 12JP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	120	124	Right-handed 310
Helix 2	AA2	A	163	171	Right-handed alpha
Helix 3	AA3	A	186	193	Right-handed alpha
Helix 4	AA4	A	203	208	Right-handed alpha
Helix 5	AA5	A	406	410	Right-handed 310
Helix 6	AA6	A	497	501	Right-handed 310
Helix 7	AA7	A	538	544	Right-handed alpha
Helix 8	AA8	A	580	584	Right-handed 310
Helix 9	AA9	A	586	595	Right-handed alpha
Helix 10	AB1	A	605	613	Right-handed alpha
Helix 11	AB2	A	694	700	Right-handed alpha
Helix 12	AB3	A	1713	1718	Right-handed alpha
Helix 13	AB4	A	1797	1801	Right-handed 310
Helix 14	AB5	A	1820	1824	Right-handed 310
Helix 15	AB6	A	1842	1850	Right-handed alpha
Helix 16	AB7	A	1890	1897	Right-handed alpha
Helix 17	AB8	A	1908	1915	Right-handed alpha
Helix 18	AB9	A	1920	1924	Right-handed 310
Helix 19	AC1	A	1949	1953	Right-handed 310
Helix 20	AC2	A	2002	2007	Right-handed alpha
Helix 21	AC3	A	2186	2188	Right-handed 310
Helix 22	AC4	A	2204	2208	Right-handed 310

There are 23 sheets in PDB entry 12JP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	54	first strand
Strand 2	A	2	13	anti-parallel
Strand 3	A	83	90	parallel
Strand 4	A	133	139	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	78	first strand
Strand 2	A	175	178	parallel
Strand 3	A	154	156	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	199	first strand
Strand 2	A	253	259	parallel
Strand 3	A	292	298	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	248	first strand
Strand 2	A	321	327	parallel
Strand 3	A	306	309	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	269	first strand
Strand 2	A	286	288	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	384	first strand
Strand 2	A	460	468	parallel
Strand 3	A	386	393	parallel
Strand 4	A	423	430	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	384	first strand
Strand 2	A	460	468	parallel
Strand 3	A	508	514	anti-parallel
Strand 4	A	482	483	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	456	first strand
Strand 2	A	549	554	parallel
Strand 3	A	529	534	anti-parallel
Strand 4	A	476	477	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	572	575	first strand
Strand 2	A	633	641	parallel
Strand 3	A	674	682	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	578	579	first strand
Strand 2	A	614	615	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	626	628	first strand
Strand 2	A	704	707	parallel
Strand 3	A	688	690	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	649	651	first strand
Strand 2	A	668	670	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	658	660	first strand
Strand 2	A	663	665	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1733	1738	first strand
Strand 2	A	1699	1704	anti-parallel
Strand 3	A	1769	1777	parallel
Strand 4	A	1811	1819	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1786	1787	first strand
Strand 2	A	1832	1838	anti-parallel
Strand 3	A	1852	1858	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1875	1880	first strand
Strand 2	A	1940	1946	parallel
Strand 3	A	1984	1988	anti-parallel
Strand 4	A	1963	1965	anti-parallel
Strand 5	A	1971	1973	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1933	1935	first strand
Strand 2	A	2011	2017	parallel
Strand 3	A	1994	2000	anti-parallel
Strand 4	A	1954	1958	anti-parallel
Strand 5	A	1975	1978	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2037	2039	first strand
Strand 2	A	2071	2086	anti-parallel
Strand 3	A	2136	2156	anti-parallel
Strand 4	A	2098	2106	anti-parallel
Strand 5	A	2126	2127	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2037	2039	first strand
Strand 2	A	2071	2086	anti-parallel
Strand 3	A	2165	2170	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2089	2090	first strand
Strand 2	A	2095	2096	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2176	2177	first strand
Strand 2	A	2320	2326	anti-parallel
Strand 3	A	2230	2246	anti-parallel
Strand 4	A	2293	2313	anti-parallel
Strand 5	A	2257	2265	anti-parallel
Strand 6	A	2272	2273	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2190	2192	first strand
Strand 2	A	2230	2246	anti-parallel
Strand 3	A	2293	2313	anti-parallel
Strand 4	A	2257	2265	anti-parallel
Strand 5	A	2283	2284	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2275	2276	first strand
Strand 2	A	2279	2280	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 12JP

Analysis of interatomic Contacts of Structural Units in PDB entry:
12JP