Analysis of interatomic Contacts of Structural Units in PDB entry:
12JZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 12JZ entry

There are 3 chains in PDB entry 12JZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 29	LEU 1145
B	ALA 27	LEU 1145
C	ALA 27	LEU 1144

There are 67 helices in PDB entry 12JZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	294	304	Right-handed alpha
Helix 2	AA2	A	337	343	Right-handed alpha
Helix 3	AA3	A	365	372	Right-handed alpha
Helix 4	AA4	A	384	389	Right-handed 310
Helix 5	AA5	A	405	410	Right-handed 310
Helix 6	AA6	A	416	422	Right-handed alpha
Helix 7	AA7	A	438	443	Right-handed alpha
Helix 8	AA8	A	630	636	Right-handed alpha
Helix 9	AA9	A	737	744	Right-handed alpha
Helix 10	AB1	A	746	754	Right-handed alpha
Helix 11	AB2	A	755	757	Right-handed 310
Helix 12	AB3	A	758	783	Right-handed alpha
Helix 13	AB4	A	816	826	Right-handed alpha
Helix 14	AB5	A	866	884	Right-handed alpha
Helix 15	AB6	A	886	890	Right-handed 310
Helix 16	AB7	A	897	909	Right-handed alpha
Helix 17	AB8	A	912	918	Right-handed alpha
Helix 18	AB9	A	919	941	Right-handed alpha
Helix 19	AC1	A	945	965	Right-handed alpha
Helix 20	AC2	A	966	968	Right-handed 310
Helix 21	AC3	A	976	984	Right-handed alpha
Helix 22	AC4	A	985	1033	Right-handed alpha
Helix 23	AC5	A	1140	1145	Right-handed alpha
Helix 24	AC6	B	294	304	Right-handed alpha
Helix 25	AC7	B	337	342	Right-handed alpha
Helix 26	AC8	B	364	371	Right-handed 310
Helix 27	AC9	B	383	389	Right-handed 310
Helix 28	AD1	B	403	407	Right-handed 310
Helix 29	AD2	B	417	421	Right-handed alpha
Helix 30	AD3	B	630	636	Right-handed alpha
Helix 31	AD4	B	737	743	Right-handed alpha
Helix 32	AD5	B	746	755	Right-handed alpha
Helix 33	AD6	B	758	783	Right-handed alpha
Helix 34	AD7	B	816	827	Right-handed alpha
Helix 35	AD8	B	850	855	Right-handed alpha
Helix 36	AD9	B	866	884	Right-handed alpha
Helix 37	AE1	B	886	890	Right-handed 310
Helix 38	AE2	B	897	909	Right-handed alpha
Helix 39	AE3	B	912	918	Right-handed alpha
Helix 40	AE4	B	919	941	Right-handed alpha
Helix 41	AE5	B	945	965	Right-handed alpha
Helix 42	AE6	B	966	968	Right-handed 310
Helix 43	AE7	B	976	984	Right-handed alpha
Helix 44	AE8	B	985	1033	Right-handed alpha
Helix 45	AE9	B	1140	1145	Right-handed alpha
Helix 46	AF1	C	293	303	Right-handed alpha
Helix 47	AF2	C	336	342	Right-handed alpha
Helix 48	AF3	C	348	352	Right-handed 310
Helix 49	AF4	C	364	369	Right-handed alpha
Helix 50	AF5	C	382	388	Right-handed 310
Helix 51	AF6	C	405	409	Right-handed 310
Helix 52	AF7	C	415	421	Right-handed alpha
Helix 53	AF8	C	629	635	Right-handed alpha
Helix 54	AF9	C	736	743	Right-handed alpha
Helix 55	AG1	C	745	753	Right-handed alpha
Helix 56	AG2	C	754	756	Right-handed 310
Helix 57	AG3	C	757	782	Right-handed alpha
Helix 58	AG4	C	815	825	Right-handed alpha
Helix 59	AG5	C	865	883	Right-handed alpha
Helix 60	AG6	C	885	889	Right-handed 310
Helix 61	AG7	C	896	908	Right-handed alpha
Helix 62	AG8	C	912	917	Right-handed alpha
Helix 63	AG9	C	918	940	Right-handed alpha
Helix 64	AH1	C	944	964	Right-handed alpha
Helix 65	AH2	C	965	967	Right-handed 310
Helix 66	AH3	C	975	983	Right-handed alpha
Helix 67	AH4	C	984	1032	Right-handed alpha

There are 44 sheets in PDB entry 12JZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	31	first strand
Strand 2	A	62	66	anti-parallel
Strand 3	A	265	269	anti-parallel
Strand 4	A	91	95	anti-parallel
Strand 5	A	190	198	anti-parallel
Strand 6	A	201	209	anti-parallel
Strand 7	A	224	229	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	B	565	566	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	56	first strand
Strand 2	A	271	279	anti-parallel
Strand 3	A	285	290	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	86	first strand
Strand 2	A	237	240	anti-parallel
Strand 3	A	105	108	anti-parallel
Strand 4	A	117	118	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	122	first strand
Strand 2	A	127	128	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	133	first strand
Strand 2	A	165	169	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	319	first strand
Strand 2	A	592	599	anti-parallel
Strand 3	A	609	613	anti-parallel
Strand 4	A	648	651	anti-parallel
Strand 5	A	643	644	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	328	first strand
Strand 2	A	538	543	parallel
Strand 3	A	546	554	anti-parallel
Strand 4	A	584	588	anti-parallel
Strand 5	A	573	577	anti-parallel
Strand 6	A	565	567	anti-parallel
Strand 7	C	42	43	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	394	403	anti-parallel
Strand 3	A	507	516	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	376	380	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	524	525	parallel
Strand 3	A	391	392	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	660	first strand
Strand 2	A	691	697	parallel
Strand 3	A	670	675	anti-parallel
Strand 4	A	664	667	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	702	704	first strand
Strand 2	C	787	789	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	728	first strand
Strand 2	A	1059	1077	anti-parallel
Strand 3	A	1047	1056	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	728	first strand
Strand 2	A	1059	1077	anti-parallel
Strand 3	A	1094	1097	anti-parallel
Strand 4	A	1102	1105	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	733	736	first strand
Strand 2	A	858	861	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	788	790	first strand
Strand 2	B	702	704	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1122	first strand
Strand 2	A	1087	1090	anti-parallel
Strand 3	A	1081	1082	anti-parallel
Strand 4	A	1133	1134	parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	61	66	anti-parallel
Strand 3	B	264	269	anti-parallel
Strand 4	B	90	96	anti-parallel
Strand 5	B	187	197	anti-parallel
Strand 6	B	200	210	anti-parallel
Strand 7	B	224	229	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	43	first strand
Strand 2	C	564	566	parallel
Strand 3	C	572	576	anti-parallel
Strand 4	C	583	587	anti-parallel
Strand 5	C	545	553	anti-parallel
Strand 6	C	537	542	anti-parallel
Strand 7	C	324	327	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	55	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	85	first strand
Strand 2	B	237	242	anti-parallel
Strand 3	B	101	107	anti-parallel
Strand 4	B	116	122	anti-parallel
Strand 5	B	125	131	anti-parallel
Strand 6	B	168	172	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	319	first strand
Strand 2	B	592	599	anti-parallel
Strand 3	B	609	613	anti-parallel
Strand 4	B	648	651	anti-parallel
Strand 5	B	643	644	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	328	first strand
Strand 2	B	538	543	parallel
Strand 3	B	546	554	anti-parallel
Strand 4	B	584	588	anti-parallel
Strand 5	B	575	577	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	394	402	anti-parallel
Strand 3	B	508	516	anti-parallel
Strand 4	B	431	436	anti-parallel
Strand 5	B	376	379	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	362	first strand
Strand 2	B	524	525	parallel
Strand 3	B	391	392	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	655	first strand
Strand 2	B	691	696	parallel
Strand 3	B	670	675	anti-parallel
Strand 4	B	664	667	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	728	first strand
Strand 2	B	1059	1077	anti-parallel
Strand 3	B	1047	1056	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	728	first strand
Strand 2	B	1059	1077	anti-parallel
Strand 3	B	1094	1097	anti-parallel
Strand 4	B	1102	1105	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	733	736	first strand
Strand 2	B	858	861	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	788	790	first strand
Strand 2	C	701	703	parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1120	1122	first strand
Strand 2	B	1086	1090	anti-parallel
Strand 3	B	1081	1083	anti-parallel
Strand 4	B	1133	1134	parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	30	first strand
Strand 2	C	61	66	anti-parallel
Strand 3	C	263	268	anti-parallel
Strand 4	C	90	96	anti-parallel
Strand 5	C	187	197	anti-parallel
Strand 6	C	200	210	anti-parallel
Strand 7	C	223	228	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	55	first strand
Strand 2	C	270	278	anti-parallel
Strand 3	C	284	288	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	C	236	239	anti-parallel
Strand 3	C	104	107	anti-parallel
Strand 4	C	116	122	anti-parallel
Strand 5	C	125	131	anti-parallel
Strand 6	C	169	171	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	318	first strand
Strand 2	C	591	598	anti-parallel
Strand 3	C	608	612	anti-parallel
Strand 4	C	647	650	anti-parallel
Strand 5	C	641	643	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	357	first strand
Strand 2	C	393	402	anti-parallel
Strand 3	C	506	515	anti-parallel
Strand 4	C	430	436	anti-parallel
Strand 5	C	375	378	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	360	361	first strand
Strand 2	C	523	524	parallel
Strand 3	C	390	391	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	452	first strand
Strand 2	C	492	493	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	653	654	first strand
Strand 2	C	690	695	parallel
Strand 3	C	669	674	anti-parallel
Strand 4	C	663	666	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	710	727	first strand
Strand 2	C	1058	1076	anti-parallel
Strand 3	C	1046	1055	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	710	727	first strand
Strand 2	C	1058	1076	anti-parallel
Strand 3	C	1093	1096	anti-parallel
Strand 4	C	1101	1104	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	732	735	first strand
Strand 2	C	857	860	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1119	1121	first strand
Strand 2	C	1085	1089	anti-parallel
Strand 3	C	1080	1082	anti-parallel
Strand 4	C	1132	1133	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 12JZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
12JZ