Analysis of interatomic Contacts of Structural Units in PDB entry:
12KH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 12KH entry

There are 2 chains in PDB entry 12KH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2ILE 463
B
 MET 1ILE 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 12KH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 23Right-handed alpha
Helix 2
AA2
A
24 27Right-handed 310
Helix 3
AA3
A
41 56Right-handed alpha
Helix 4
AA4
A
57 59Right-handed 310
Helix 5
AA5
A
93 107Right-handed alpha
Helix 6
AA6
A
141 162Right-handed alpha
Helix 7
AA7
A
171 184Right-handed alpha
Helix 8
AA8
A
185 204Right-handed alpha
Helix 9
AA9
A
214 225Right-handed alpha
Helix 10
AB1
A
249 263Right-handed alpha
Helix 11
AB2
A
266 283Right-handed alpha
Helix 12
AB3
A
300 306Right-handed alpha
Helix 13
AB4
A
325 343Right-handed alpha
Helix 14
AB5
A
347 360Right-handed alpha
Helix 15
AB6
A
383 387Right-handed 310
Helix 16
AB7
A
430 451Right-handed alpha
Helix 17
AB8
A
455 463Right-handed alpha
Helix 18
AB9
B
9 23Right-handed alpha
Helix 19
AC1
B
24 27Right-handed 310
Helix 20
AC2
B
41 56Right-handed alpha
Helix 21
AC3
B
57 59Right-handed 310
Helix 22
AC4
B
93 106Right-handed alpha
Helix 23
AC5
B
141 162Right-handed alpha
Helix 24
AC6
B
171 184Right-handed alpha
Helix 25
AC7
B
185 204Right-handed alpha
Helix 26
AC8
B
214 224Right-handed alpha
Helix 27
AC9
B
249 263Right-handed alpha
Helix 28
AD1
B
266 283Right-handed alpha
Helix 29
AD2
B
300 306Right-handed alpha
Helix 30
AD3
B
325 343Right-handed alpha
Helix 31
AD4
B
347 360Right-handed alpha
Helix 32
AD5
B
383 387Right-handed 310
Helix 33
AD6
B
430 451Right-handed alpha
Helix 34
AD7
B
455 463Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 12KH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
73 76anti-parallel
Strand 3
A
61 63anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 88first strand
Strand 2
A
117 124parallel
Strand 3
A
128 136anti-parallel
Strand 4
A
29 37anti-parallel
Strand 5
A
391 396anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
365 366anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 248first strand
Strand 2
A
418 425anti-parallel
Strand 3
A
405 411anti-parallel
Strand 4
A
370 374parallel
Strand 5
A
288 295parallel
Strand 6
A
312 319anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 88first strand
Strand 2
B
117 124parallel
Strand 3
B
128 136anti-parallel
Strand 4
B
29 37anti-parallel
Strand 5
B
391 396anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
74 76anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 233first strand
Strand 2
B
365 366anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 248first strand
Strand 2
B
418 425anti-parallel
Strand 3
B
405 411anti-parallel
Strand 4
B
370 374parallel
Strand 5
B
288 295parallel
Strand 6
B
312 319anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il