Analysis of interatomic Contacts of Structural Units in PDB entry:
12NW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 12NW entry

There is 1 chain in PDB entry 12NW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 12NW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 16Right-handed alpha
Helix 2
AA2
A
31 44Right-handed alpha
Helix 3
AA3
A
55 60Right-handed 310
Helix 4
AA4
A
61 78Right-handed alpha
Helix 5
AA5
A
94 98Right-handed 310
Helix 6
AA6
A
101 106Right-handed 310
Helix 7
AA7
A
111 119Right-handed alpha
Helix 8
AA8
A
123 146Right-handed alpha
Helix 9
AA9
A
168 172Right-handed 310
Helix 10
AB1
A
174 192Right-handed alpha
Helix 11
AB2
A
209 213Right-handed 310
Helix 12
AB3
A
219 223Right-handed 310
Helix 13
AB4
A
236 246Right-handed alpha
Helix 14
AB5
A
266 270Right-handed 310
Helix 15
AB6
A
271 285Right-handed alpha
Helix 16
AB7
A
312 320Right-handed alpha
Helix 17
AB8
A
321 323Right-handed 310
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There is 1 sheet (AA1) in PDB entry 12NW.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 311first strand
Strand 2
A
20 25parallel
Strand 3
A
291 294parallel
Strand 4
A
254 261parallel
Strand 5
A
225 232parallel
Strand 6
A
198 205parallel
Strand 7
A
150 152parallel
Strand 8
A
81 85parallel
Strand 9
A
49 53parallel
Strand 10
A
20 25parallel
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