Analysis of interatomic Contacts of Structural Units in PDB entry:
12NY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 12NY entry

There is 1 chain in PDB entry 12NY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 744LYS 1050
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 12NY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
747 760Right-handed alpha
Helix 2
AA2
A
774 787Right-handed alpha
Helix 3
AA3
A
798 800Right-handed 310
Helix 4
AA4
A
804 821Right-handed alpha
Helix 5
AA5
A
838 846Right-handed alpha
Helix 6
AA6
A
855 863Right-handed alpha
Helix 7
AA7
A
867 890Right-handed alpha
Helix 8
AA8
A
912 916Right-handed 310
Helix 9
AA9
A
918 935Right-handed alpha
Helix 10
AB1
A
954 962Right-handed alpha
Helix 11
AB2
A
964 968Right-handed 310
Helix 12
AB3
A
982 998Right-handed alpha
Helix 13
AB4
A
1019 1034Right-handed alpha
Helix 14
AB5
A
1045 1049Right-handed 310
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There is 1 sheet (AA1) in PDB entry 12NY.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
764 765first strand
Strand 2
A
1037 1042parallel
Strand 3
A
1002 1009parallel
Strand 4
A
970 977parallel
Strand 5
A
942 949parallel
Strand 6
A
894 897parallel
Strand 7
A
825 829parallel
Strand 8
A
792 796parallel
Strand 9
A
767 768parallel
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