Analysis of interatomic Contacts of Structural Units in PDB entry:
12OA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 12OA entry

There are 2 chains in PDB entry 12OA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 116ILE 484
B
 GLY 118ILE 484
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 12OA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
121 135Right-handed alpha
Helix 2
AA2
A
150 163Right-handed alpha
Helix 3
AA3
A
174 176Right-handed 310
Helix 4
AA4
A
181 198Right-handed alpha
Helix 5
AA5
A
214 218Right-handed 310
Helix 6
AA6
A
221 227Right-handed 310
Helix 7
AA7
A
231 239Right-handed alpha
Helix 8
AA8
A
243 266Right-handed alpha
Helix 9
AA9
A
294 311Right-handed alpha
Helix 10
AB1
A
356 368Right-handed alpha
Helix 11
AB2
A
389 393Right-handed 310
Helix 12
AB3
A
396 405Right-handed alpha
Helix 13
AB4
A
407 416Right-handed alpha
Helix 14
AB5
A
430 446Right-handed alpha
Helix 15
AB6
A
472 474Right-handed 310
Helix 16
AB7
A
475 484Right-handed alpha
Helix 17
AB8
B
121 135Right-handed alpha
Helix 18
AB9
B
150 163Right-handed alpha
Helix 19
AC1
B
174 176Right-handed 310
Helix 20
AC2
B
181 198Right-handed alpha
Helix 21
AC3
B
214 218Right-handed 310
Helix 22
AC4
B
221 227Right-handed 310
Helix 23
AC5
B
231 238Right-handed alpha
Helix 24
AC6
B
243 266Right-handed alpha
Helix 25
AC7
B
294 311Right-handed alpha
Helix 26
AC8
B
356 368Right-handed alpha
Helix 27
AC9
B
396 405Right-handed alpha
Helix 28
AD1
B
407 417Right-handed alpha
Helix 29
AD2
B
430 446Right-handed alpha
Helix 30
AD3
B
472 474Right-handed 310
Helix 31
AD4
B
475 484Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 12OA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 471first strand
Strand 2
A
140 147parallel
Strand 3
A
451 454parallel
Strand 4
A
373 380parallel
Strand 5
A
345 352parallel
Strand 6
A
318 325parallel
Strand 7
A
270 272parallel
Strand 8
A
201 205parallel
Strand 9
A
168 172parallel
Strand 10
A
140 147parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
470 471first strand
Strand 2
B
140 147parallel
Strand 3
B
451 454parallel
Strand 4
B
373 380parallel
Strand 5
B
345 352parallel
Strand 6
B
318 325parallel
Strand 7
B
270 272parallel
Strand 8
B
201 205parallel
Strand 9
B
168 172parallel
Strand 10
B
140 147parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il