Analysis of interatomic Contacts of Structural Units in PDB entry:
12OF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 12OF entry

There are 12 chains in PDB entry 12OF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 131	GLU 602
B	ALA 21	LEU 115
C	THR 16	LYS 118
D	ARG 30	LYS 122
E	GLU 32	LYS 122
F	GLY 44	ALA 135
G	LYS 37	ALA 135
H	ARG 23	GLY 102
I	ASN 25	GLY 102
L	A 15	A 21
L	G 23	T 181
M	A 31	T 197

There are 48 helices in PDB entry 12OF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	132	144	Right-handed alpha
Helix 2	AA2	A	166	174	Right-handed alpha
Helix 3	AA3	A	189	194	Right-handed alpha
Helix 4	AA4	A	199	211	Right-handed alpha
Helix 5	AA5	A	212	214	Right-handed 310
Helix 6	AA6	A	244	248	Right-handed 310
Helix 7	AA7	A	267	271	Right-handed 310
Helix 8	AA8	A	286	293	Right-handed alpha
Helix 9	AA9	A	358	370	Right-handed alpha
Helix 10	AB1	A	445	451	Right-handed 310
Helix 11	AB2	A	493	516	Right-handed alpha
Helix 12	AB3	A	539	546	Right-handed alpha
Helix 13	AB4	A	578	583	Right-handed alpha
Helix 14	AB5	A	588	602	Right-handed alpha
Helix 15	AB6	B	26	37	Right-handed alpha
Helix 16	AB7	B	45	73	Right-handed alpha
Helix 17	AB8	B	79	90	Right-handed alpha
Helix 18	AB9	B	90	97	Right-handed alpha
Helix 19	AC1	C	17	21	Right-handed alpha
Helix 20	AC2	C	26	37	Right-handed alpha
Helix 21	AC3	C	45	73	Right-handed alpha
Helix 22	AC4	C	79	90	Right-handed alpha
Helix 23	AC5	C	90	97	Right-handed alpha
Helix 24	AC6	C	112	116	Right-handed 310
Helix 25	AC7	D	34	46	Right-handed alpha
Helix 26	AC8	D	52	81	Right-handed alpha
Helix 27	AC9	D	87	99	Right-handed alpha
Helix 28	AD1	D	100	122	Right-handed alpha
Helix 29	AD2	E	34	46	Right-handed alpha
Helix 30	AD3	E	52	81	Right-handed alpha
Helix 31	AD4	E	87	99	Right-handed alpha
Helix 32	AD5	E	100	121	Right-handed alpha
Helix 33	AD6	F	45	57	Right-handed alpha
Helix 34	AD7	F	63	79	Right-handed alpha
Helix 35	AD8	F	85	114	Right-handed alpha
Helix 36	AD9	F	120	132	Right-handed alpha
Helix 37	AE1	G	44	57	Right-handed alpha
Helix 38	AE2	G	63	77	Right-handed alpha
Helix 39	AE3	G	85	114	Right-handed alpha
Helix 40	AE4	G	120	132	Right-handed alpha
Helix 41	AE5	H	24	29	Right-handed 310
Helix 42	AE6	H	30	41	Right-handed alpha
Helix 43	AE7	H	49	76	Right-handed alpha
Helix 44	AE8	H	82	94	Right-handed alpha
Helix 45	AE9	I	25	29	Right-handed 310
Helix 46	AF1	I	30	41	Right-handed alpha
Helix 47	AF2	I	49	76	Right-handed alpha
Helix 48	AF3	I	82	93	Right-handed alpha

There are 15 sheets in PDB entry 12OF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	158	first strand
Strand 2	A	164	165	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	284	first strand
Strand 2	A	392	400	anti-parallel
Strand 3	A	414	422	anti-parallel
Strand 4	A	329	333	anti-parallel
Strand 5	A	324	325	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	306	first strand
Strand 2	A	310	316	anti-parallel
Strand 3	A	372	378	parallel
Strand 4	A	392	400	anti-parallel
Strand 5	A	414	422	anti-parallel
Strand 6	A	402	407	anti-parallel
Strand 7	A	452	456	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	466	first strand
Strand 2	A	471	474	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	528	529	first strand
Strand 2	A	537	538	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	78	first strand
Strand 2	D	50	51	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	H	97	98	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	E	85	86	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	E	50	51	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	I	97	98	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	84	first strand
Strand 2	H	80	81	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	119	first strand
Strand 2	H	45	46	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	83	84	first strand
Strand 2	I	80	81	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	118	119	first strand
Strand 2	I	45	46	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 12OF

Analysis of interatomic Contacts of Structural Units in PDB entry:
12OF