Analysis of interatomic Contacts of Structural Units in PDB entry:
12PL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 12PL entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 12PL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 125ASN 297
A
 PHE 299PHE 463
A
 CYS 465THR 466
B
 VAL 125ASN 297
B
 PHE 299PHE 463
B
 CYS 465ALA 467
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 12PL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
126 128Right-handed 310
Helix 2
AA2
A
163 167Right-handed alpha
Helix 3
AA3
A
171 185Right-handed alpha
Helix 4
AA4
A
214 222Right-handed alpha
Helix 5
AA5
A
228 249Right-handed alpha
Helix 6
AA6
A
257 259Right-handed 310
Helix 7
AA7
A
282 286Right-handed 310
Helix 8
AA8
A
290 294Right-handed 310
Helix 9
AA9
A
307 312Right-handed alpha
Helix 10
AB1
A
319 335Right-handed alpha
Helix 11
AB2
A
343 354Right-handed alpha
Helix 12
AB3
A
365 376Right-handed alpha
Helix 13
AB4
A
385 391Right-handed alpha
Helix 14
AB5
A
392 396Right-handed 310
Helix 15
AB6
A
399 405Right-handed alpha
Helix 16
AB7
A
418 428Right-handed alpha
Helix 17
AB8
A
453 458Right-handed alpha
Helix 18
AB9
A
459 461Right-handed 310
Helix 19
AC1
B
126 128Right-handed 310
Helix 20
AC2
B
163 168Right-handed alpha
Helix 21
AC3
B
170 185Right-handed alpha
Helix 22
AC4
B
214 220Right-handed alpha
Helix 23
AC5
B
228 249Right-handed alpha
Helix 24
AC6
B
257 259Right-handed 310
Helix 25
AC7
B
273 277Right-handed 310
Helix 26
AC8
B
290 294Right-handed 310
Helix 27
AC9
B
307 312Right-handed alpha
Helix 28
AD1
B
318 335Right-handed alpha
Helix 29
AD2
B
343 354Right-handed alpha
Helix 30
AD3
B
365 376Right-handed alpha
Helix 31
AD4
B
385 391Right-handed alpha
Helix 32
AD5
B
392 396Right-handed 310
Helix 33
AD6
B
399 404Right-handed alpha
Helix 34
AD7
B
418 426Right-handed alpha
Helix 35
AD8
B
453 459Right-handed alpha
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There are 6 sheets in PDB entry 12PL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 137first strand
Strand 2
A
143 149anti-parallel
Strand 3
A
155 162anti-parallel
Strand 4
A
202 208anti-parallel
Strand 5
A
193 198anti-parallel
Strand 6
B
465 466anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 252first strand
Strand 2
A
278 279anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 263first strand
Strand 2
A
269 271anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 135first strand
Strand 2
B
142 149anti-parallel
Strand 3
B
155 162anti-parallel
Strand 4
B
202 208anti-parallel
Strand 5
B
193 198anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 252first strand
Strand 2
B
278 279anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 263first strand
Strand 2
B
269 271anti-parallel
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