Analysis of interatomic Contacts of Structural Units in PDB entry:
12RJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 12RJ entry

There are 2 chains in PDB entry 12RJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	THR 735
B	MET 1	THR 735

There are 50 helices in PDB entry 12RJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	45	Right-handed alpha
Helix 2	AA2	A	126	130	Right-handed 310
Helix 3	AA3	A	242	246	Right-handed 310
Helix 4	AA4	A	249	260	Right-handed alpha
Helix 5	AA5	A	260	273	Right-handed alpha
Helix 6	AA6	A	278	288	Right-handed alpha
Helix 7	AA7	A	288	295	Right-handed alpha
Helix 8	AA8	A	316	324	Right-handed alpha
Helix 9	AA9	A	324	331	Right-handed alpha
Helix 10	AB1	A	332	344	Right-handed alpha
Helix 11	AB2	A	369	385	Right-handed alpha
Helix 12	AB3	A	386	409	Right-handed alpha
Helix 13	AB4	A	433	454	Right-handed alpha
Helix 14	AB5	A	464	479	Right-handed alpha
Helix 15	AB6	A	510	516	Right-handed alpha
Helix 16	AB7	A	519	525	Right-handed 310
Helix 17	AB8	A	527	542	Right-handed alpha
Helix 18	AB9	A	561	569	Right-handed 310
Helix 19	AC1	A	574	578	Right-handed 310
Helix 20	AC2	A	579	582	Right-handed 310
Helix 21	AC3	A	587	600	Right-handed alpha
Helix 22	AC4	A	602	618	Right-handed alpha
Helix 23	AC5	A	643	647	Right-handed 310
Helix 24	AC6	A	654	661	Right-handed 310
Helix 25	AC7	A	662	669	Right-handed alpha
Helix 26	AC8	B	39	45	Right-handed alpha
Helix 27	AC9	B	126	130	Right-handed 310
Helix 28	AD1	B	242	246	Right-handed 310
Helix 29	AD2	B	249	260	Right-handed alpha
Helix 30	AD3	B	260	273	Right-handed alpha
Helix 31	AD4	B	278	288	Right-handed alpha
Helix 32	AD5	B	288	295	Right-handed alpha
Helix 33	AD6	B	316	324	Right-handed alpha
Helix 34	AD7	B	324	331	Right-handed alpha
Helix 35	AD8	B	332	344	Right-handed alpha
Helix 36	AD9	B	369	385	Right-handed alpha
Helix 37	AE1	B	386	409	Right-handed alpha
Helix 38	AE2	B	433	454	Right-handed alpha
Helix 39	AE3	B	464	479	Right-handed alpha
Helix 40	AE4	B	510	516	Right-handed alpha
Helix 41	AE5	B	519	525	Right-handed 310
Helix 42	AE6	B	527	542	Right-handed alpha
Helix 43	AE7	B	561	569	Right-handed 310
Helix 44	AE8	B	574	578	Right-handed 310
Helix 45	AE9	B	579	582	Right-handed 310
Helix 46	AF1	B	587	600	Right-handed alpha
Helix 47	AF2	B	602	618	Right-handed alpha
Helix 48	AF3	B	643	647	Right-handed 310
Helix 49	AF4	B	654	661	Right-handed 310
Helix 50	AF5	B	662	669	Right-handed alpha

There are 26 sheets in PDB entry 12RJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	5	first strand
Strand 2	A	91	97	anti-parallel
Strand 3	A	102	108	anti-parallel
Strand 4	A	111	118	anti-parallel
Strand 5	A	133	142	anti-parallel
Strand 6	A	196	206	anti-parallel
Strand 7	A	178	183	anti-parallel
Strand 8	A	169	173	anti-parallel
Strand 9	A	162	166	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	15	first strand
Strand 2	A	21	25	anti-parallel
Strand 3	A	28	30	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	A	73	76	parallel
Strand 3	A	64	70	anti-parallel
Strand 4	A	148	156	anti-parallel
Strand 5	A	189	191	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	210	first strand
Strand 2	A	239	240	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	276	first strand
Strand 2	A	688	693	anti-parallel
Strand 3	A	698	703	anti-parallel
Strand 4	A	727	733	parallel
Strand 5	A	709	712	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	298	first strand
Strand 2	A	304	306	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	432	first strand
Strand 2	A	490	491	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	458	459	first strand
Strand 2	A	462	463	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	480	481	first strand
Strand 2	A	486	487	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	506	first strand
Strand 2	A	557	558	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	543	546	first strand
Strand 2	A	551	554	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	584	586	first strand
Strand 2	A	627	631	anti-parallel
Strand 3	A	637	638	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	672	first strand
Strand 2	A	676	678	anti-parallel
Strand 3	A	720	722	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	5	first strand
Strand 2	B	91	97	anti-parallel
Strand 3	B	102	108	anti-parallel
Strand 4	B	111	118	anti-parallel
Strand 5	B	133	142	anti-parallel
Strand 6	B	196	206	anti-parallel
Strand 7	B	178	183	anti-parallel
Strand 8	B	169	173	anti-parallel
Strand 9	B	162	166	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	15	first strand
Strand 2	B	21	25	anti-parallel
Strand 3	B	28	30	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	89	first strand
Strand 2	B	73	76	parallel
Strand 3	B	64	70	anti-parallel
Strand 4	B	148	156	anti-parallel
Strand 5	B	189	191	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	210	first strand
Strand 2	B	239	240	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	276	first strand
Strand 2	B	688	693	anti-parallel
Strand 3	B	698	703	anti-parallel
Strand 4	B	727	733	parallel
Strand 5	B	709	712	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	298	first strand
Strand 2	B	304	306	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	432	first strand
Strand 2	B	490	491	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	459	first strand
Strand 2	B	462	463	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	480	481	first strand
Strand 2	B	486	487	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	505	506	first strand
Strand 2	B	557	558	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	543	546	first strand
Strand 2	B	551	554	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	584	586	first strand
Strand 2	B	627	631	anti-parallel
Strand 3	B	637	638	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	671	672	first strand
Strand 2	B	676	678	anti-parallel
Strand 3	B	720	722	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 12RJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
12RJ