Analysis of interatomic Contacts of Structural Units in PDB entry:
12RP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 12RP entry

There are 3 chains in PDB entry 12RP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 329ASN 529
C
 PHE 329LEU 517
B
 LEU 26ASP 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 12RP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
338 343Right-handed alpha
Helix 2
AA2
A
364 371Right-handed 310
Helix 3
AA3
A
383 389Right-handed 310
Helix 4
AA4
A
406 410Right-handed 310
Helix 5
AA5
A
416 422Right-handed alpha
Helix 6
AA6
C
337 343Right-handed alpha
Helix 7
AA7
C
365 370Right-handed alpha
Helix 8
AA8
C
383 387Right-handed 310
Helix 9
AA9
C
403 410Right-handed 310
Helix 10
AB1
C
416 422Right-handed alpha
Helix 11
AB2
C
439 441Right-handed 310
Helix 12
AB3
C
445 449Right-handed 310
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There are 8 sheets in PDB entry 12RP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 358first strand
Strand 2
A
395 403anti-parallel
Strand 3
A
507 515anti-parallel
Strand 4
A
431 437anti-parallel
Strand 5
A
376 380anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 392first strand
Strand 2
A
524 525anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 454first strand
Strand 2
A
492 494anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
354 358first strand
Strand 2
C
395 402anti-parallel
Strand 3
C
508 515anti-parallel
Strand 4
C
431 437anti-parallel
Strand 5
C
376 380anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
452 454first strand
Strand 2
C
492 494anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 30first strand
Strand 2
B
61 67anti-parallel
Strand 3
B
263 269anti-parallel
Strand 4
B
89 96anti-parallel
Strand 5
B
187 197anti-parallel
Strand 6
B
200 210anti-parallel
Strand 7
B
222 229anti-parallel
Strand 8
B
36 37parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 55first strand
Strand 2
B
271 279anti-parallel
Strand 3
B
285 290anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 85first strand
Strand 2
B
237 242anti-parallel
Strand 3
B
101 107anti-parallel
Strand 4
B
116 120anti-parallel
Strand 5
B
127 135anti-parallel
Strand 6
B
160 170anti-parallel
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