Analysis of interatomic Contacts of Structural Units in PDB entry:
12SL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 12SL entry

There are 5 chains in PDB entry 12SL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 69SER 1235
B
 GLU 67VAL 485
C
 GLU 67ASN 484
P
 C 6 G 23
T
 C 12 G 35
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 12SL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
80 88Right-handed alpha
Helix 2
AA2
A
96 111Right-handed alpha
Helix 3
AA3
A
134 159Right-handed alpha
Helix 4
AA4
A
180 182Right-handed 310
Helix 5
AA5
A
225 230Right-handed alpha
Helix 6
AA6
A
270 276Right-handed alpha
Helix 7
AA7
A
293 301Right-handed alpha
Helix 8
AA8
A
305 317Right-handed alpha
Helix 9
AA9
A
346 351Right-handed alpha
Helix 10
AB1
A
355 364Right-handed alpha
Helix 11
AB2
A
375 380Right-handed alpha
Helix 12
AB3
A
381 388Right-handed alpha
Helix 13
AB4
A
388 418Right-handed alpha
Helix 14
AB5
A
420 432Right-handed alpha
Helix 15
AB6
A
439 472Right-handed alpha
Helix 16
AB7
A
473 481Right-handed 310
Helix 17
AB8
A
538 549Right-handed alpha
Helix 18
AB9
A
570 575Right-handed alpha
Helix 19
AC1
A
598 604Right-handed alpha
Helix 20
AC2
A
648 662Right-handed alpha
Helix 21
AC3
A
767 769Right-handed 310
Helix 22
AC4
A
770 777Right-handed alpha
Helix 23
AC5
A
781 785Right-handed 310
Helix 24
AC6
A
786 803Right-handed alpha
Helix 25
AC7
A
804 810Right-handed alpha
Helix 26
AC8
A
822 827Right-handed alpha
Helix 27
AC9
A
871 875Right-handed 310
Helix 28
AD1
A
893 907Right-handed alpha
Helix 29
AD2
A
914 922Right-handed alpha
Helix 30
AD3
A
930 940Right-handed alpha
Helix 31
AD4
A
942 955Right-handed alpha
Helix 32
AD5
A
958 970Right-handed alpha
Helix 33
AD6
A
974 988Right-handed alpha
Helix 34
AD7
A
998 1004Right-handed alpha
Helix 35
AD8
A
1021 1031Right-handed alpha
Helix 36
AD9
A
1035 1040Right-handed 310
Helix 37
AE1
A
1054 1067Right-handed alpha
Helix 38
AE2
A
1092 1123Right-handed alpha
Helix 39
AE3
A
1145 1167Right-handed alpha
Helix 40
AE4
A
1205 1211Right-handed alpha
Helix 41
AE5
A
1219 1228Right-handed alpha
Helix 42
AE6
B
68 77Right-handed alpha
Helix 43
AE7
B
87 94Right-handed alpha
Helix 44
AE8
B
100 119Right-handed alpha
Helix 45
AE9
B
184 190Right-handed alpha
Helix 46
AF1
B
193 200Right-handed alpha
Helix 47
AF2
B
247 265Right-handed alpha
Helix 48
AF3
B
269 271Right-handed 310
Helix 49
AF4
B
307 315Right-handed alpha
Helix 50
AF5
B
318 322Right-handed 310
Helix 51
AF6
B
341 354Right-handed alpha
Helix 52
AF7
B
393 410Right-handed alpha
Helix 53
AF8
B
415 419Right-handed 310
Helix 54
AF9
B
424 435Right-handed alpha
Helix 55
AG1
B
470 483Right-handed alpha
Helix 56
AG2
C
68 76Right-handed alpha
Helix 57
AG3
C
87 93Right-handed alpha
Helix 58
AG4
C
100 120Right-handed alpha
Helix 59
AG5
C
184 192Right-handed alpha
Helix 60
AG6
C
192 201Right-handed alpha
Helix 61
AG7
C
247 266Right-handed alpha
Helix 62
AG8
C
269 271Right-handed 310
Helix 63
AG9
C
307 314Right-handed alpha
Helix 64
AH1
C
342 354Right-handed alpha
Helix 65
AH2
C
394 410Right-handed alpha
Helix 66
AH3
C
424 435Right-handed alpha
Helix 67
AH4
C
444 449Right-handed 310
Helix 68
AH5
C
470 483Right-handed alpha
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There are 14 sheets in PDB entry 12SL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 187first strand
Strand 2
A
174 178anti-parallel
Strand 3
A
219 224anti-parallel
Strand 4
A
209 216anti-parallel
Strand 5
A
194 201anti-parallel
Strand 6
A
264 266parallel
Strand 7
A
289 291parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 438first strand
Strand 2
A
837 840anti-parallel
Strand 3
A
814 815anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
619 622first strand
Strand 2
A
610 615anti-parallel
Strand 3
A
606 607anti-parallel
Strand 4
A
779 780anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
884 889first strand
Strand 2
A
1137 1142anti-parallel
Strand 3
A
1127 1129anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
992 997first strand
Strand 2
A
1044 1050anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1183 1184first strand
Strand 2
A
1217 1218anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 127first strand
Strand 2
B
206 218parallel
Strand 3
B
230 243anti-parallel
Strand 4
B
334 335anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
180 181anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 279first strand
Strand 2
B
285 291anti-parallel
Strand 3
B
298 304anti-parallel
Strand 4
B
337 340anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 326first strand
Strand 2
B
329 331anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
413 414first strand
Strand 2
B
383 384parallel
Strand 3
B
439 442parallel
Strand 4
B
452 457anti-parallel
Strand 5
B
463 467anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
206 218first strand
Strand 2
C
230 243anti-parallel
Strand 3
C
334 341anti-parallel
Strand 4
C
297 306anti-parallel
Strand 5
C
284 292anti-parallel
Strand 6
C
273 280anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
324 326first strand
Strand 2
C
329 331anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
413 415first strand
Strand 2
C
383 387parallel
Strand 3
C
439 443parallel
Strand 4
C
452 457anti-parallel
Strand 5
C
466 467anti-parallel
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