Analysis of interatomic Contacts of Structural Units in PDB entry:
12ZJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 12ZJ entry

There are 6 chains in PDB entry 12ZJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 63TRP 205
B
 ALA 969ALA 978
C
 ASP 62ALA 204
D
 SER 968ALA 978
E
 THR 63TRP 205
F
 TRP 970ARG 977
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 12ZJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
77 81Right-handed 310
Helix 2
AA2
A
145 149Right-handed 310
Helix 3
AA3
A
173 177Right-handed alpha
Helix 4
AA4
C
62 66Right-handed 310
Helix 5
AA5
C
77 81Right-handed 310
Helix 6
AA6
C
145 149Right-handed 310
Helix 7
AA7
C
173 177Right-handed alpha
Helix 8
AA8
D
968 972Right-handed 310
Helix 9
AA9
E
77 81Right-handed 310
Helix 10
AB1
E
145 149Right-handed 310
Helix 11
AB2
E
173 177Right-handed alpha
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There are 9 sheets in PDB entry 12ZJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 75first strand
Strand 2
A
189 197anti-parallel
Strand 3
A
131 140anti-parallel
Strand 4
A
150 159anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
95 104anti-parallel
Strand 3
A
90 92anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
95 104anti-parallel
Strand 3
A
114 121anti-parallel
Strand 4
A
164 172anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 75first strand
Strand 2
C
189 197anti-parallel
Strand 3
C
131 140anti-parallel
Strand 4
C
150 159anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 86first strand
Strand 2
C
95 106anti-parallel
Strand 3
C
90 92anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 86first strand
Strand 2
C
95 106anti-parallel
Strand 3
C
109 121anti-parallel
Strand 4
C
164 172anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
68 75first strand
Strand 2
E
189 197anti-parallel
Strand 3
E
131 140anti-parallel
Strand 4
E
150 159anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
85 86first strand
Strand 2
E
95 105anti-parallel
Strand 3
E
90 92anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
85 86first strand
Strand 2
E
95 105anti-parallel
Strand 3
E
113 120anti-parallel
Strand 4
E
164 172anti-parallel
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