Analysis of interatomic Contacts of Structural Units in PDB entry:
12ZN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 12ZN entry

There are 4 chains in PDB entry 12ZN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 72LYS 365
B
 PHE 29GLU 315
C
 PHE 29GLU 315
D
 LEU 76GLN 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 12ZN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
84 97Right-handed alpha
Helix 2
AA2
A
171 191Right-handed alpha
Helix 3
AA3
A
220 232Right-handed alpha
Helix 4
AA4
A
255 265Right-handed alpha
Helix 5
AA5
A
333 338Right-handed alpha
Helix 6
AA6
A
341 351Right-handed alpha
Helix 7
AA7
A
351 364Right-handed alpha
Helix 8
AA8
B
31 44Right-handed alpha
Helix 9
AA9
B
58 68Right-handed alpha
Helix 10
AB1
B
125 145Right-handed alpha
Helix 11
AB2
B
172 183Right-handed alpha
Helix 12
AB3
B
194 198Right-handed 310
Helix 13
AB4
B
199 218Right-handed alpha
Helix 14
AB5
B
237 242Right-handed alpha
Helix 15
AB6
B
281 289Right-handed alpha
Helix 16
AB7
B
293 304Right-handed alpha
Helix 17
AB8
B
304 314Right-handed alpha
Helix 18
AB9
C
31 44Right-handed alpha
Helix 19
AC1
C
58 68Right-handed alpha
Helix 20
AC2
C
125 145Right-handed alpha
Helix 21
AC3
C
172 183Right-handed alpha
Helix 22
AC4
C
194 198Right-handed 310
Helix 23
AC5
C
199 218Right-handed alpha
Helix 24
AC6
C
237 241Right-handed alpha
Helix 25
AC7
C
242 244Right-handed 310
Helix 26
AC8
C
281 289Right-handed alpha
Helix 27
AC9
C
293 304Right-handed alpha
Helix 28
AD1
C
304 314Right-handed alpha
Helix 29
AD2
D
81 83Right-handed 310
Helix 30
AD3
D
84 97Right-handed alpha
Helix 31
AD4
D
172 191Right-handed alpha
Helix 32
AD5
D
220 231Right-handed alpha
Helix 33
AD6
D
260 265Right-handed alpha
Helix 34
AD7
D
340 352Right-handed alpha
Helix 35
AD8
D
352 362Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 12ZN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 147first strand
Strand 2
A
150 158anti-parallel
Strand 3
A
98 105parallel
Strand 4
A
207 212parallel
Strand 5
A
235 240parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 100first strand
Strand 2
B
103 111anti-parallel
Strand 3
B
45 52parallel
Strand 4
B
159 164parallel
Strand 5
B
188 192parallel
Strand 6
B
246 247parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 257first strand
Strand 2
B
260 267anti-parallel
Strand 3
B
270 273anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 100first strand
Strand 2
C
103 111anti-parallel
Strand 3
C
45 52parallel
Strand 4
C
159 164parallel
Strand 5
C
188 192parallel
Strand 6
C
246 247parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
254 257first strand
Strand 2
C
260 267anti-parallel
Strand 3
C
270 273anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
139 146first strand
Strand 2
D
151 158anti-parallel
Strand 3
D
98 105parallel
Strand 4
D
207 211parallel
Strand 5
D
235 239parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il