Analysis of interatomic Contacts of Structural Units in PDB entry:
13AJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 13AJ entry

There are 8 chains in PDB entry 13AJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	PRO 44	PRO 668
E	GLY 670	ALA 753
F	PRO 44	PRO 668
F	GLY 670	ALA 753
G	PRO 44	PRO 668
G	GLY 670	ALA 753
H	PRO 44	PRO 668
H	GLY 670	ALA 753

There are 88 helices in PDB entry 13AJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	64	70	Right-handed 310
Helix 2	AA2	E	107	118	Right-handed alpha
Helix 3	AA3	E	213	222	Right-handed alpha
Helix 4	AA4	E	236	246	Right-handed alpha
Helix 5	AA5	E	249	257	Right-handed alpha
Helix 6	AA6	E	258	262	Right-handed 310
Helix 7	AA7	E	303	314	Right-handed alpha
Helix 8	AA8	E	316	329	Right-handed alpha
Helix 9	AA9	E	381	386	Right-handed alpha
Helix 10	AB1	E	405	424	Right-handed alpha
Helix 11	AB2	E	505	514	Right-handed alpha
Helix 12	AB3	E	516	533	Right-handed alpha
Helix 13	AB4	E	536	551	Right-handed alpha
Helix 14	AB5	E	551	562	Right-handed alpha
Helix 15	AB6	E	568	573	Right-handed 310
Helix 16	AB7	E	585	589	Right-handed 310
Helix 17	AB8	E	612	626	Right-handed alpha
Helix 18	AB9	E	658	662	Right-handed 310
Helix 19	AC1	E	678	691	Right-handed alpha
Helix 20	AC2	E	700	707	Right-handed 310
Helix 21	AC3	E	727	737	Right-handed alpha
Helix 22	AC4	E	744	748	Right-handed 310
Helix 23	AC5	F	64	70	Right-handed 310
Helix 24	AC6	F	107	118	Right-handed alpha
Helix 25	AC7	F	213	222	Right-handed alpha
Helix 26	AC8	F	236	246	Right-handed alpha
Helix 27	AC9	F	249	257	Right-handed alpha
Helix 28	AD1	F	258	262	Right-handed 310
Helix 29	AD2	F	303	314	Right-handed alpha
Helix 30	AD3	F	316	329	Right-handed alpha
Helix 31	AD4	F	381	386	Right-handed alpha
Helix 32	AD5	F	405	424	Right-handed alpha
Helix 33	AD6	F	505	514	Right-handed alpha
Helix 34	AD7	F	516	533	Right-handed alpha
Helix 35	AD8	F	536	551	Right-handed alpha
Helix 36	AD9	F	551	562	Right-handed alpha
Helix 37	AE1	F	568	573	Right-handed 310
Helix 38	AE2	F	585	589	Right-handed 310
Helix 39	AE3	F	612	626	Right-handed alpha
Helix 40	AE4	F	658	662	Right-handed 310
Helix 41	AE5	F	678	691	Right-handed alpha
Helix 42	AE6	F	700	707	Right-handed 310
Helix 43	AE7	F	727	737	Right-handed alpha
Helix 44	AE8	F	744	748	Right-handed 310
Helix 45	AE9	G	64	70	Right-handed 310
Helix 46	AF1	G	107	118	Right-handed alpha
Helix 47	AF2	G	213	222	Right-handed alpha
Helix 48	AF3	G	236	246	Right-handed alpha
Helix 49	AF4	G	249	257	Right-handed alpha
Helix 50	AF5	G	258	262	Right-handed 310
Helix 51	AF6	G	303	314	Right-handed alpha
Helix 52	AF7	G	316	329	Right-handed alpha
Helix 53	AF8	G	381	386	Right-handed alpha
Helix 54	AF9	G	405	424	Right-handed alpha
Helix 55	AG1	G	505	514	Right-handed alpha
Helix 56	AG2	G	516	533	Right-handed alpha
Helix 57	AG3	G	536	551	Right-handed alpha
Helix 58	AG4	G	551	562	Right-handed alpha
Helix 59	AG5	G	568	573	Right-handed 310
Helix 60	AG6	G	585	589	Right-handed 310
Helix 61	AG7	G	612	626	Right-handed alpha
Helix 62	AG8	G	658	662	Right-handed 310
Helix 63	AG9	G	678	691	Right-handed alpha
Helix 64	AH1	G	700	707	Right-handed 310
Helix 65	AH2	G	727	737	Right-handed alpha
Helix 66	AH3	G	744	748	Right-handed 310
Helix 67	AH4	H	64	70	Right-handed 310
Helix 68	AH5	H	107	118	Right-handed alpha
Helix 69	AH6	H	213	222	Right-handed alpha
Helix 70	AH7	H	236	246	Right-handed alpha
Helix 71	AH8	H	249	257	Right-handed alpha
Helix 72	AH9	H	258	262	Right-handed 310
Helix 73	AI1	H	303	314	Right-handed alpha
Helix 74	AI2	H	316	329	Right-handed alpha
Helix 75	AI3	H	381	386	Right-handed alpha
Helix 76	AI4	H	405	424	Right-handed alpha
Helix 77	AI5	H	505	514	Right-handed alpha
Helix 78	AI6	H	516	533	Right-handed alpha
Helix 79	AI7	H	536	551	Right-handed alpha
Helix 80	AI8	H	551	562	Right-handed alpha
Helix 81	AI9	H	568	573	Right-handed 310
Helix 82	AJ1	H	585	589	Right-handed 310
Helix 83	AJ2	H	612	626	Right-handed alpha
Helix 84	AJ3	H	658	662	Right-handed 310
Helix 85	AJ4	H	678	691	Right-handed alpha
Helix 86	AJ5	H	700	707	Right-handed 310
Helix 87	AJ6	H	727	737	Right-handed alpha
Helix 88	AJ7	H	744	748	Right-handed 310

There are 22 sheets in PDB entry 13AJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	72	73	first strand
Strand 2	G	453	454	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	97	first strand
Strand 2	H	493	494	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	197	200	first strand
Strand 2	E	183	189	anti-parallel
Strand 3	E	160	168	anti-parallel
Strand 4	E	130	140	anti-parallel
Strand 5	E	368	377	anti-parallel
Strand 6	E	333	342	anti-parallel
Strand 7	E	286	295	anti-parallel
Strand 8	E	271	280	anti-parallel
Strand 9	E	400	401	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	453	454	first strand
Strand 2	G	72	73	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	489	491	first strand
Strand 2	F	489	491	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	493	494	first strand
Strand 2	H	96	97	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	652	653	first strand
Strand 2	E	629	634	parallel
Strand 3	E	602	606	parallel
Strand 4	E	665	667	parallel
Strand 5	E	695	698	parallel
Strand 6	E	718	721	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	640	641	first strand
Strand 2	E	647	648	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	72	73	first strand
Strand 2	H	453	454	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	96	97	first strand
Strand 2	G	493	494	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	197	200	first strand
Strand 2	F	183	189	anti-parallel
Strand 3	F	160	168	anti-parallel
Strand 4	F	130	140	anti-parallel
Strand 5	F	368	377	anti-parallel
Strand 6	F	333	342	anti-parallel
Strand 7	F	286	295	anti-parallel
Strand 8	F	271	280	anti-parallel
Strand 9	F	400	401	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	453	454	first strand
Strand 2	H	72	73	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	493	494	first strand
Strand 2	G	96	97	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	652	653	first strand
Strand 2	F	629	634	parallel
Strand 3	F	602	606	parallel
Strand 4	F	665	667	parallel
Strand 5	F	695	698	parallel
Strand 6	F	718	721	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	640	641	first strand
Strand 2	F	647	648	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	197	200	first strand
Strand 2	G	183	189	anti-parallel
Strand 3	G	160	168	anti-parallel
Strand 4	G	130	140	anti-parallel
Strand 5	G	368	377	anti-parallel
Strand 6	G	333	342	anti-parallel
Strand 7	G	286	295	anti-parallel
Strand 8	G	271	280	anti-parallel
Strand 9	G	400	401	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	489	491	first strand
Strand 2	H	489	491	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	652	653	first strand
Strand 2	G	629	634	parallel
Strand 3	G	602	606	parallel
Strand 4	G	665	667	parallel
Strand 5	G	695	698	parallel
Strand 6	G	718	721	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	640	641	first strand
Strand 2	G	647	648	anti-parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	197	200	first strand
Strand 2	H	183	189	anti-parallel
Strand 3	H	160	168	anti-parallel
Strand 4	H	130	140	anti-parallel
Strand 5	H	368	377	anti-parallel
Strand 6	H	333	342	anti-parallel
Strand 7	H	286	295	anti-parallel
Strand 8	H	271	280	anti-parallel
Strand 9	H	400	401	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	652	653	first strand
Strand 2	H	629	634	parallel
Strand 3	H	602	606	parallel
Strand 4	H	665	667	parallel
Strand 5	H	695	698	parallel
Strand 6	H	718	721	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	640	641	first strand
Strand 2	H	647	648	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 13AJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
13AJ