Analysis of interatomic Contacts of Structural Units in PDB entry:
13BB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 13BB entry

There is 1 chain in PDB entry 13BB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLY 553
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 13BB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 18Right-handed alpha
Helix 2
AA2
A
28 30Right-handed 310
Helix 3
AA3
A
31 42Right-handed alpha
Helix 4
AA4
A
51 67Right-handed alpha
Helix 5
AA5
A
76 82Right-handed alpha
Helix 6
AA6
A
83 94Right-handed alpha
Helix 7
AA7
A
118 124Right-handed alpha
Helix 8
AA8
A
125 127Right-handed 310
Helix 9
AA9
A
135 137Right-handed 310
Helix 10
AB1
A
138 152Right-handed alpha
Helix 11
AB2
A
164 169Right-handed alpha
Helix 12
AB3
A
187 200Right-handed alpha
Helix 13
AB4
A
211 215Right-handed 310
Helix 14
AB5
A
216 231Right-handed alpha
Helix 15
AB6
A
239 241Right-handed 310
Helix 16
AB7
A
259 269Right-handed alpha
Helix 17
AB8
A
318 329Right-handed alpha
Helix 18
AB9
A
338 355Right-handed alpha
Helix 19
AC1
A
364 376Right-handed alpha
Helix 20
AC2
A
387 397Right-handed alpha
Helix 21
AC3
A
416 428Right-handed alpha
Helix 22
AC4
A
439 445Right-handed alpha
Helix 23
AC5
A
448 455Right-handed alpha
Helix 24
AC6
A
469 479Right-handed alpha
Helix 25
AC7
A
492 500Right-handed alpha
Helix 26
AC8
A
509 511Right-handed 310
Helix 27
AC9
A
512 524Right-handed alpha
Helix 28
AD1
A
534 548Right-handed alpha
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There are 3 sheets in PDB entry 13BB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
22 25parallel
Strand 3
A
71 74parallel
Strand 4
A
97 103parallel
Strand 5
A
157 163parallel
Strand 6
A
129 132parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 255first strand
Strand 2
A
234 237parallel
Strand 3
A
204 208parallel
Strand 4
A
271 275parallel
Strand 5
A
294 299parallel
Strand 6
A
313 316parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 406first strand
Strand 2
A
381 384parallel
Strand 3
A
433 438parallel
Strand 4
A
459 465parallel
Strand 5
A
526 532parallel
Strand 6
A
503 506parallel
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