Analysis of interatomic Contacts of Structural Units in PDB entry:
13BV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 13BV entry

There are 4 chains in PDB entry 13BV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LYS 6	ARG 275
C	PHE 75	ARG 398
D	CYS 137	ASN 449
A	SER 15	LYS 1358

There are 66 helices in PDB entry 13BV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	34	41	Right-handed alpha
Helix 2	AA2	B	42	46	Right-handed 310
Helix 3	AA3	B	47	52	Right-handed alpha
Helix 4	AA4	B	171	184	Right-handed alpha
Helix 5	AA5	B	190	212	Right-handed alpha
Helix 6	AA6	B	264	274	Right-handed alpha
Helix 7	AA7	C	76	98	Right-handed alpha
Helix 8	AA8	C	101	205	Right-handed alpha
Helix 9	AA9	C	275	279	Right-handed 310
Helix 10	AB1	C	299	322	Right-handed alpha
Helix 11	AB2	C	330	336	Right-handed alpha
Helix 12	AB3	C	340	362	Right-handed alpha
Helix 13	AB4	C	373	383	Right-handed alpha
Helix 14	AB5	D	138	267	Right-handed alpha
Helix 15	AB6	D	268	274	Right-handed alpha
Helix 16	AB7	D	299	322	Right-handed alpha
Helix 17	AB8	D	364	385	Right-handed alpha
Helix 18	AB9	D	421	448	Right-handed alpha
Helix 19	AC1	A	16	24	Right-handed alpha
Helix 20	AC2	A	64	78	Right-handed alpha
Helix 21	AC3	A	79	81	Right-handed 310
Helix 22	AC4	A	110	116	Right-handed alpha
Helix 23	AC5	A	121	142	Right-handed alpha
Helix 24	AC6	A	180	187	Right-handed alpha
Helix 25	AC7	A	198	200	Right-handed 310
Helix 26	AC8	A	236	253	Right-handed alpha
Helix 27	AC9	A	260	270	Right-handed alpha
Helix 28	AD1	A	274	280	Right-handed alpha
Helix 29	AD2	A	283	295	Right-handed alpha
Helix 30	AD3	A	303	311	Right-handed alpha
Helix 31	AD4	A	317	323	Right-handed alpha
Helix 32	AD5	A	323	330	Right-handed alpha
Helix 33	AD6	A	338	358	Right-handed alpha
Helix 34	AD7	A	374	387	Right-handed alpha
Helix 35	AD8	A	391	406	Right-handed alpha
Helix 36	AD9	A	407	409	Right-handed 310
Helix 37	AE1	A	410	417	Right-handed alpha
Helix 38	AE2	A	418	426	Right-handed alpha
Helix 39	AE3	A	430	447	Right-handed alpha
Helix 40	AE4	A	453	456	Right-handed 310
Helix 41	AE5	A	457	462	Right-handed alpha
Helix 42	AE6	A	462	468	Right-handed alpha
Helix 43	AE7	A	475	504	Right-handed alpha
Helix 44	AE8	A	527	546	Right-handed alpha
Helix 45	AE9	A	549	560	Right-handed alpha
Helix 46	AF1	A	564	569	Right-handed alpha
Helix 47	AF2	A	569	576	Right-handed alpha
Helix 48	AF3	A	576	585	Right-handed alpha
Helix 49	AF4	A	590	609	Right-handed alpha
Helix 50	AF5	A	612	624	Right-handed alpha
Helix 51	AF6	A	628	645	Right-handed alpha
Helix 52	AF7	A	649	661	Right-handed alpha
Helix 53	AF8	A	662	666	Right-handed 310
Helix 54	AF9	A	668	686	Right-handed alpha
Helix 55	AG1	A	687	695	Right-handed alpha
Helix 56	AG2	A	695	700	Right-handed alpha
Helix 57	AG3	A	712	720	Right-handed alpha
Helix 58	AG4	A	725	735	Right-handed alpha
Helix 59	AG5	A	737	754	Right-handed alpha
Helix 60	AG6	A	764	777	Right-handed alpha
Helix 61	AG7	A	780	807	Right-handed alpha
Helix 62	AG8	A	821	825	Right-handed alpha
Helix 63	AG9	A	939	966	Right-handed alpha
Helix 64	AH1	A	1022	1026	Right-handed alpha
Helix 65	AH2	A	1272	1276	Right-handed 310
Helix 66	AH3	A	1294	1298	Right-handed 310

There are 18 sheets in PDB entry 13BV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	819	820	first strand
Strand 2	B	224	226	parallel
Strand 3	B	229	234	anti-parallel
Strand 4	B	7	11	parallel
Strand 5	A	829	831	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	96	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	220	221	anti-parallel
Strand 4	B	139	140	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	75	first strand
Strand 2	B	58	64	anti-parallel
Strand 3	B	105	113	anti-parallel
Strand 4	B	119	128	anti-parallel
Strand 5	B	146	147	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	144	first strand
Strand 2	B	216	217	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	210	first strand
Strand 2	C	260	263	anti-parallel
Strand 3	C	269	271	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	276	277	first strand
Strand 2	D	283	285	anti-parallel
Strand 3	D	288	290	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	328	331	first strand
Strand 2	D	338	341	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	396	397	first strand
Strand 2	D	402	403	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	39	44	anti-parallel
Strand 3	A	49	54	anti-parallel
Strand 4	A	100	104	anti-parallel
Strand 5	A	89	91	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	162	165	parallel
Strand 3	A	154	156	anti-parallel
Strand 4	A	108	109	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	176	first strand
Strand 2	A	202	203	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	985	990	first strand
Strand 2	A	1353	1357	anti-parallel
Strand 3	A	1343	1349	anti-parallel
Strand 4	A	1332	1339	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1007	1008	first strand
Strand 2	A	1020	1021	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1047	1049	first strand
Strand 2	A	1057	1060	anti-parallel
Strand 3	A	1065	1069	anti-parallel
Strand 4	A	1084	1089	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1098	1105	first strand
Strand 2	A	1110	1116	anti-parallel
Strand 3	A	1122	1125	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1144	1149	first strand
Strand 2	A	1155	1160	anti-parallel
Strand 3	A	1166	1169	anti-parallel
Strand 4	A	1174	1178	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1187	1192	first strand
Strand 2	A	1199	1204	anti-parallel
Strand 3	A	1210	1214	anti-parallel
Strand 4	A	1219	1226	anti-parallel
Strand 5	A	1300	1304	parallel
Strand 6	A	1289	1292	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1242	1247	first strand
Strand 2	A	1256	1260	anti-parallel
Strand 3	A	1266	1268	anti-parallel
Strand 4	A	1277	1278	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 13BV

Analysis of interatomic Contacts of Structural Units in PDB entry:
13BV