Analysis of interatomic Contacts of Structural Units in PDB entry:
13CO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 13CO entry

There are 5 chains in PDB entry 13CO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4PHE 571
B
 GLU 4TYR 574
C
 GLU 4SER 575
D
 GLU 4SER 575
E
 LEU 31PHE 45
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 98 helices in PDB entry 13CO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 7Right-handed 310
Helix 2
AA2
A
42 46Right-handed 310
Helix 3
AA3
A
80 85Right-handed alpha
Helix 4
AA4
A
130 134Right-handed 310
Helix 5
AA5
A
135 143Right-handed alpha
Helix 6
AA6
A
154 159Right-handed alpha
Helix 7
AA7
A
170 187Right-handed alpha
Helix 8
AA8
A
188 190Right-handed 310
Helix 9
AA9
A
203 214Right-handed alpha
Helix 10
AB1
A
215 220Right-handed alpha
Helix 11
AB2
A
240 256Right-handed alpha
Helix 12
AB3
A
265 276Right-handed alpha
Helix 13
AB4
A
277 285Right-handed alpha
Helix 14
AB5
A
286 289Right-handed 310
Helix 15
AB6
A
311 318Right-handed alpha
Helix 16
AB7
A
336 341Right-handed 310
Helix 17
AB8
A
355 367Right-handed alpha
Helix 18
AB9
A
371 382Right-handed alpha
Helix 19
AC1
A
390 407Right-handed alpha
Helix 20
AC2
A
407 421Right-handed alpha
Helix 21
AC3
A
440 444Right-handed 310
Helix 22
AC4
A
450 455Right-handed alpha
Helix 23
AC5
A
456 460Right-handed 310
Helix 24
AC6
A
466 487Right-handed alpha
Helix 25
AC7
A
525 541Right-handed alpha
Helix 26
AC8
A
545 562Right-handed alpha
Helix 27
AC9
A
564 569Right-handed alpha
Helix 28
AD1
B
42 46Right-handed 310
Helix 29
AD2
B
80 85Right-handed alpha
Helix 30
AD3
B
130 134Right-handed 310
Helix 31
AD4
B
135 143Right-handed alpha
Helix 32
AD5
B
154 159Right-handed alpha
Helix 33
AD6
B
170 187Right-handed alpha
Helix 34
AD7
B
203 214Right-handed alpha
Helix 35
AD8
B
215 220Right-handed alpha
Helix 36
AD9
B
240 256Right-handed alpha
Helix 37
AE1
B
265 276Right-handed alpha
Helix 38
AE2
B
277 285Right-handed alpha
Helix 39
AE3
B
286 288Right-handed 310
Helix 40
AE4
B
311 318Right-handed alpha
Helix 41
AE5
B
335 340Right-handed alpha
Helix 42
AE6
B
355 367Right-handed alpha
Helix 43
AE7
B
371 382Right-handed alpha
Helix 44
AE8
B
390 407Right-handed alpha
Helix 45
AE9
B
407 421Right-handed alpha
Helix 46
AF1
B
440 444Right-handed 310
Helix 47
AF2
B
450 456Right-handed alpha
Helix 48
AF3
B
457 460Right-handed 310
Helix 49
AF4
B
466 487Right-handed alpha
Helix 50
AF5
B
525 574Right-handed alpha
Helix 51
AF6
C
42 46Right-handed 310
Helix 52
AF7
C
80 85Right-handed alpha
Helix 53
AF8
C
135 143Right-handed alpha
Helix 54
AF9
C
154 159Right-handed alpha
Helix 55
AG1
C
170 187Right-handed alpha
Helix 56
AG2
C
188 190Right-handed 310
Helix 57
AG3
C
203 215Right-handed alpha
Helix 58
AG4
C
215 220Right-handed alpha
Helix 59
AG5
C
240 256Right-handed alpha
Helix 60
AG6
C
265 275Right-handed alpha
Helix 61
AG7
C
277 285Right-handed alpha
Helix 62
AG8
C
286 289Right-handed 310
Helix 63
AG9
C
311 318Right-handed alpha
Helix 64
AH1
C
336 341Right-handed 310
Helix 65
AH2
C
355 367Right-handed alpha
Helix 66
AH3
C
371 382Right-handed alpha
Helix 67
AH4
C
390 407Right-handed alpha
Helix 68
AH5
C
407 421Right-handed alpha
Helix 69
AH6
C
440 444Right-handed 310
Helix 70
AH7
C
450 456Right-handed alpha
Helix 71
AH8
C
457 460Right-handed 310
Helix 72
AH9
C
466 487Right-handed alpha
Helix 73
AI1
C
525 541Right-handed alpha
Helix 74
AI2
C
545 575Right-handed alpha
Helix 75
AI3
D
42 46Right-handed 310
Helix 76
AI4
D
80 85Right-handed alpha
Helix 77
AI5
D
135 143Right-handed alpha
Helix 78
AI6
D
154 159Right-handed alpha
Helix 79
AI7
D
170 187Right-handed alpha
Helix 80
AI8
D
188 190Right-handed 310
Helix 81
AI9
D
203 214Right-handed alpha
Helix 82
AJ1
D
215 220Right-handed alpha
Helix 83
AJ2
D
240 256Right-handed alpha
Helix 84
AJ3
D
265 275Right-handed alpha
Helix 85
AJ4
D
277 285Right-handed alpha
Helix 86
AJ5
D
286 289Right-handed 310
Helix 87
AJ6
D
311 318Right-handed alpha
Helix 88
AJ7
D
336 342Right-handed 310
Helix 89
AJ8
D
355 367Right-handed alpha
Helix 90
AJ9
D
371 382Right-handed alpha
Helix 91
AK1
D
390 407Right-handed alpha
Helix 92
AK2
D
407 421Right-handed alpha
Helix 93
AK3
D
440 444Right-handed 310
Helix 94
AK4
D
450 455Right-handed alpha
Helix 95
AK5
D
456 460Right-handed 310
Helix 96
AK6
D
466 487Right-handed alpha
Helix 97
AK7
D
525 542Right-handed alpha
Helix 98
AK8
D
550 575Right-handed alpha
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There are 9 sheets in PDB entry 13CO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
16 18anti-parallel
Strand 3
A
59 61parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
29 36anti-parallel
Strand 3
A
98 104anti-parallel
Strand 4
A
145 149anti-parallel
Strand 5
A
112 118parallel
Strand 6
A
192 202parallel
Strand 7
A
224 228parallel
Strand 8
A
325 331parallel
Strand 9
A
424 430parallel
Strand 10
A
509 513parallel
Strand 11
A
519 522anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 69first strand
Strand 2
A
92 93parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 11first strand
Strand 2
B
16 18anti-parallel
Strand 3
B
59 61parallel
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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 22first strand
Strand 2
B
29 36anti-parallel
Strand 3
B
98 104anti-parallel
Strand 4
B
145 149anti-parallel
Strand 5
B
112 118parallel
Strand 6
B
192 202parallel
Strand 7
B
224 228parallel
Strand 8
B
325 331parallel
Strand 9
B
424 430parallel
Strand 10
B
509 513parallel
Strand 11
B
519 522anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 11first strand
Strand 2
C
16 18anti-parallel
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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 22first strand
Strand 2
C
29 36anti-parallel
Strand 3
C
98 104anti-parallel
Strand 4
C
145 149anti-parallel
Strand 5
C
112 118parallel
Strand 6
C
192 202parallel
Strand 7
C
224 228parallel
Strand 8
C
325 331parallel
Strand 9
C
424 430parallel
Strand 10
C
509 513parallel
Strand 11
C
520 522anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 11first strand
Strand 2
D
16 18anti-parallel
Strand 3
D
59 61parallel
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There are 11 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
20 22first strand
Strand 2
D
29 36anti-parallel
Strand 3
D
98 104anti-parallel
Strand 4
D
145 149anti-parallel
Strand 5
D
112 118parallel
Strand 6
D
192 202parallel
Strand 7
D
224 228parallel
Strand 8
D
325 331parallel
Strand 9
D
424 430parallel
Strand 10
D
509 513parallel
Strand 11
D
519 522anti-parallel
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