Analysis of interatomic Contacts of Structural Units in PDB entry:
13DM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 13DM entry

There are 3 chains in PDB entry 13DM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 7	ALA 958
B	PRO 8	ALA 958
C	MET 7	ALA 958

There are 62 helices in PDB entry 13DM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	13	Right-handed alpha
Helix 2	AA2	A	19	24	Right-handed alpha
Helix 3	AA3	A	25	35	Right-handed alpha
Helix 4	AA4	A	97	99	Right-handed 310
Helix 5	AA5	A	319	325	Right-handed 310
Helix 6	AA6	A	339	342	Right-handed 310
Helix 7	AA7	A	374	386	Right-handed alpha
Helix 8	AA8	A	403	408	Right-handed alpha
Helix 9	AA9	A	475	488	Right-handed alpha
Helix 10	AB1	A	489	492	Right-handed 310
Helix 11	AB2	A	511	518	Right-handed alpha
Helix 12	AB3	A	521	526	Right-handed 310
Helix 13	AB4	A	551	562	Right-handed alpha
Helix 14	AB5	A	634	646	Right-handed alpha
Helix 15	AB6	A	697	699	Right-handed 310
Helix 16	AB7	A	716	721	Right-handed alpha
Helix 17	AB8	A	774	786	Right-handed alpha
Helix 18	AB9	A	898	901	Right-handed 310
Helix 19	AC1	A	902	907	Right-handed alpha
Helix 20	AC2	B	19	24	Right-handed alpha
Helix 21	AC3	B	25	35	Right-handed alpha
Helix 22	AC4	B	97	99	Right-handed 310
Helix 23	AC5	B	320	325	Right-handed 310
Helix 24	AC6	B	339	342	Right-handed 310
Helix 25	AC7	B	374	386	Right-handed alpha
Helix 26	AC8	B	403	408	Right-handed alpha
Helix 27	AC9	B	475	488	Right-handed alpha
Helix 28	AD1	B	489	492	Right-handed 310
Helix 29	AD2	B	493	497	Right-handed 310
Helix 30	AD3	B	511	517	Right-handed alpha
Helix 31	AD4	B	521	526	Right-handed 310
Helix 32	AD5	B	537	542	Right-handed alpha
Helix 33	AD6	B	551	562	Right-handed alpha
Helix 34	AD7	B	599	603	Right-handed alpha
Helix 35	AD8	B	634	646	Right-handed alpha
Helix 36	AD9	B	697	699	Right-handed 310
Helix 37	AE1	B	716	721	Right-handed alpha
Helix 38	AE2	B	774	786	Right-handed alpha
Helix 39	AE3	B	897	901	Right-handed 310
Helix 40	AE4	B	902	907	Right-handed alpha
Helix 41	AE5	C	8	13	Right-handed alpha
Helix 42	AE6	C	19	24	Right-handed alpha
Helix 43	AE7	C	25	35	Right-handed alpha
Helix 44	AE8	C	41	45	Right-handed 310
Helix 45	AE9	C	97	99	Right-handed 310
Helix 46	AF1	C	283	287	Right-handed 310
Helix 47	AF2	C	319	325	Right-handed 310
Helix 48	AF3	C	339	342	Right-handed 310
Helix 49	AF4	C	374	386	Right-handed alpha
Helix 50	AF5	C	403	408	Right-handed alpha
Helix 51	AF6	C	475	488	Right-handed alpha
Helix 52	AF7	C	489	492	Right-handed 310
Helix 53	AF8	C	493	497	Right-handed 310
Helix 54	AF9	C	511	518	Right-handed alpha
Helix 55	AG1	C	521	526	Right-handed 310
Helix 56	AG2	C	551	562	Right-handed alpha
Helix 57	AG3	C	599	603	Right-handed alpha
Helix 58	AG4	C	634	646	Right-handed alpha
Helix 59	AG5	C	716	721	Right-handed alpha
Helix 60	AG6	C	774	786	Right-handed alpha
Helix 61	AG7	C	898	901	Right-handed 310
Helix 62	AG8	C	902	908	Right-handed alpha

There are 56 sheets in PDB entry 13DM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	68	first strand
Strand 2	A	618	629	anti-parallel
Strand 3	A	100	108	anti-parallel
Strand 4	A	566	569	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	68	first strand
Strand 2	A	618	629	anti-parallel
Strand 3	A	100	108	anti-parallel
Strand 4	A	572	573	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	75	first strand
Strand 2	A	79	88	anti-parallel
Strand 3	A	588	597	anti-parallel
Strand 4	A	355	358	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	95	first strand
Strand 2	A	584	585	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	137	first strand
Strand 2	A	168	172	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	175	first strand
Strand 2	B	464	465	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	191	first strand
Strand 2	A	202	204	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	233	first strand
Strand 2	A	292	297	parallel
Strand 3	A	271	277	anti-parallel
Strand 4	B	434	439	anti-parallel
Strand 5	B	451	453	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	247	first strand
Strand 2	A	301	302	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	310	first strand
Strand 2	A	326	329	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	337	first strand
Strand 2	A	604	605	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	410	first strand
Strand 2	A	534	535	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	421	first strand
Strand 2	A	472	473	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	424	first strand
Strand 2	B	471	473	anti-parallel
Strand 3	B	420	421	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	454	first strand
Strand 2	A	432	438	anti-parallel
Strand 3	A	462	465	anti-parallel
Strand 4	C	168	175	parallel
Strand 5	C	133	137	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	454	first strand
Strand 2	A	432	438	anti-parallel
Strand 3	C	271	277	anti-parallel
Strand 4	C	292	297	anti-parallel
Strand 5	C	228	233	parallel
Strand 6	C	177	178	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	652	655	first strand
Strand 2	A	935	940	anti-parallel
Strand 3	A	948	953	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	660	667	first strand
Strand 2	A	925	932	anti-parallel
Strand 3	A	688	695	anti-parallel
Strand 4	A	882	885	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	673	681	first strand
Strand 2	A	910	918	anti-parallel
Strand 3	A	729	736	anti-parallel
Strand 4	A	740	741	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	673	681	first strand
Strand 2	A	910	918	anti-parallel
Strand 3	A	729	736	anti-parallel
Strand 4	A	754	755	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	766	767	first strand
Strand 2	A	772	773	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	810	817	first strand
Strand 2	A	869	876	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	68	first strand
Strand 2	B	618	629	anti-parallel
Strand 3	B	100	108	anti-parallel
Strand 4	B	566	569	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	68	first strand
Strand 2	B	618	629	anti-parallel
Strand 3	B	100	108	anti-parallel
Strand 4	B	572	573	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	75	first strand
Strand 2	B	79	88	anti-parallel
Strand 3	B	588	597	anti-parallel
Strand 4	B	355	358	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	95	first strand
Strand 2	B	584	585	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	178	first strand
Strand 2	B	228	233	anti-parallel
Strand 3	B	133	137	parallel
Strand 4	B	168	175	anti-parallel
Strand 5	C	461	465	parallel
Strand 6	C	432	438	anti-parallel
Strand 7	C	452	453	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	178	first strand
Strand 2	B	228	233	anti-parallel
Strand 3	B	292	297	parallel
Strand 4	B	271	276	anti-parallel
Strand 5	C	432	438	anti-parallel
Strand 6	C	452	453	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	191	first strand
Strand 2	B	202	204	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	247	first strand
Strand 2	B	301	302	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	310	first strand
Strand 2	B	326	329	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	337	first strand
Strand 2	B	604	605	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	410	first strand
Strand 2	B	534	535	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	652	655	first strand
Strand 2	B	936	940	anti-parallel
Strand 3	B	948	952	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	660	667	first strand
Strand 2	B	925	932	anti-parallel
Strand 3	B	688	695	anti-parallel
Strand 4	B	882	885	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	673	681	first strand
Strand 2	B	910	918	anti-parallel
Strand 3	B	729	736	anti-parallel
Strand 4	B	740	741	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	673	681	first strand
Strand 2	B	910	918	anti-parallel
Strand 3	B	729	736	anti-parallel
Strand 4	B	754	755	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	766	767	first strand
Strand 2	B	772	773	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	810	817	first strand
Strand 2	B	869	876	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	618	629	anti-parallel
Strand 3	C	100	108	anti-parallel
Strand 4	C	566	569	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	618	629	anti-parallel
Strand 3	C	100	108	anti-parallel
Strand 4	C	572	573	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	75	first strand
Strand 2	C	79	88	anti-parallel
Strand 3	C	588	597	anti-parallel
Strand 4	C	355	358	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	95	first strand
Strand 2	C	584	585	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	191	first strand
Strand 2	C	202	203	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	247	first strand
Strand 2	C	301	302	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	262	first strand
Strand 2	C	265	266	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	310	first strand
Strand 2	C	326	329	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	337	first strand
Strand 2	C	604	605	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	410	first strand
Strand 2	C	534	535	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	420	421	first strand
Strand 2	C	472	473	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	652	655	first strand
Strand 2	C	935	940	anti-parallel
Strand 3	C	948	953	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	660	667	first strand
Strand 2	C	925	932	anti-parallel
Strand 3	C	688	695	anti-parallel
Strand 4	C	882	885	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	673	681	first strand
Strand 2	C	910	918	anti-parallel
Strand 3	C	729	736	anti-parallel
Strand 4	C	740	741	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	673	681	first strand
Strand 2	C	910	918	anti-parallel
Strand 3	C	729	736	anti-parallel
Strand 4	C	754	755	anti-parallel

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There are 2 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	766	767	first strand
Strand 2	C	772	773	anti-parallel

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There are 2 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	810	817	first strand
Strand 2	C	869	876	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 13DM

Analysis of interatomic Contacts of Structural Units in PDB entry:
13DM