Analysis of interatomic Contacts of Structural Units in PDB entry:
13DU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 13DU entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 13DU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 449ALA 728
A
 GLU 730LEU 733
B
 ASP 341ALA 620
B
 GLU 622ARG 627
X
 GLU 3ASP 237
Y
 ASP 4ASP 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 13DU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
491 506Right-handed alpha
Helix 2
AA2
A
536 543Right-handed alpha
Helix 3
AA3
A
549 570Right-handed alpha
Helix 4
AA4
A
609 613Right-handed 310
Helix 5
AA5
A
621 626Right-handed alpha
Helix 6
AA6
A
634 652Right-handed alpha
Helix 7
AA7
A
664 672Right-handed alpha
Helix 8
AA8
A
677 681Right-handed 310
Helix 9
AA9
A
686 698Right-handed alpha
Helix 10
AB1
A
706 721Right-handed alpha
Helix 11
AB2
B
345 349Right-handed 310
Helix 12
AB3
B
383 399Right-handed alpha
Helix 13
AB4
B
428 435Right-handed alpha
Helix 14
AB5
B
441 462Right-handed alpha
Helix 15
AB6
B
513 518Right-handed alpha
Helix 16
AB7
B
526 544Right-handed alpha
Helix 17
AB8
B
553 564Right-handed alpha
Helix 18
AB9
B
578 590Right-handed alpha
Helix 19
AC1
B
592 596Right-handed 310
Helix 20
AC2
B
598 613Right-handed alpha
Helix 21
AC3
X
4 17Right-handed alpha
Helix 22
AC4
X
19 33Right-handed alpha
Helix 23
AC5
X
41 72Right-handed alpha
Helix 24
AC6
X
80 110Right-handed alpha
Helix 25
AC7
X
117 138Right-handed alpha
Helix 26
AC8
X
141 166Right-handed alpha
Helix 27
AC9
X
170 187Right-handed alpha
Helix 28
AD1
X
190 208Right-handed alpha
Helix 29
AD2
X
213 236Right-handed alpha
Helix 30
AD3
Y
5 19Right-handed alpha
Helix 31
AD4
Y
20 35Right-handed alpha
Helix 32
AD5
Y
39 72Right-handed alpha
Helix 33
AD6
Y
76 106Right-handed alpha
Helix 34
AD7
Y
113 135Right-handed alpha
Helix 35
AD8
Y
137 161Right-handed alpha
Helix 36
AD9
Y
166 183Right-handed alpha
Helix 37
AE1
Y
186 204Right-handed alpha
Helix 38
AE2
Y
214 233Right-handed alpha
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There are 5 sheets in PDB entry 13DU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 466first strand
Strand 2
A
469 475anti-parallel
Strand 3
A
479 484anti-parallel
Strand 4
A
526 530anti-parallel
Strand 5
A
516 520anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 573first strand
Strand 2
A
599 600anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 584first strand
Strand 2
A
590 592anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 356first strand
Strand 2
B
362 367anti-parallel
Strand 3
B
371 376anti-parallel
Strand 4
B
418 422anti-parallel
Strand 5
B
408 412anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
464 465first strand
Strand 2
B
491 492anti-parallel
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