Analysis of interatomic Contacts of Structural Units in PDB entry:
13DV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 13DV entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 7 chains in PDB entry 13DV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 444ALA 728
A
 GLU 730PRO 731
B
 ASP 341ALA 620
B
 GLU 622PRO 623
C
 LEU 63THR 378
X
 GLU 5ASP 237
Y
 GLU 6ASP 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 13DV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
491 507Right-handed alpha
Helix 2
AA2
A
536 542Right-handed alpha
Helix 3
AA3
A
549 570Right-handed alpha
Helix 4
AA4
A
609 613Right-handed 310
Helix 5
AA5
A
621 626Right-handed alpha
Helix 6
AA6
A
634 652Right-handed alpha
Helix 7
AA7
A
664 672Right-handed alpha
Helix 8
AA8
A
686 697Right-handed alpha
Helix 9
AA9
A
706 721Right-handed alpha
Helix 10
AB1
B
383 399Right-handed alpha
Helix 11
AB2
B
428 434Right-handed alpha
Helix 12
AB3
B
441 462Right-handed alpha
Helix 13
AB4
B
478 480Right-handed 310
Helix 14
AB5
B
526 544Right-handed alpha
Helix 15
AB6
B
554 563Right-handed alpha
Helix 16
AB7
B
578 590Right-handed alpha
Helix 17
AB8
B
592 596Right-handed 310
Helix 18
AB9
B
598 613Right-handed alpha
Helix 19
AC1
C
64 66Right-handed 310
Helix 20
AC2
C
104 116Right-handed alpha
Helix 21
AC3
C
117 121Right-handed 310
Helix 22
AC4
C
151 159Right-handed alpha
Helix 23
AC5
C
162 185Right-handed alpha
Helix 24
AC6
C
212 219Right-handed alpha
Helix 25
AC7
C
220 222Right-handed 310
Helix 26
AC8
C
231 236Right-handed alpha
Helix 27
AC9
C
241 259Right-handed alpha
Helix 28
AD1
C
309 320Right-handed alpha
Helix 29
AD2
C
331 342Right-handed alpha
Helix 30
AD3
C
351 356Right-handed alpha
Helix 31
AD4
C
358 367Right-handed alpha
Helix 32
AD5
C
370 378Right-handed alpha
Helix 33
AD6
X
6 18Right-handed alpha
Helix 34
AD7
X
19 31Right-handed alpha
Helix 35
AD8
X
41 73Right-handed alpha
Helix 36
AD9
X
80 110Right-handed alpha
Helix 37
AE1
X
117 138Right-handed alpha
Helix 38
AE2
X
143 165Right-handed alpha
Helix 39
AE3
X
170 187Right-handed alpha
Helix 40
AE4
X
190 208Right-handed alpha
Helix 41
AE5
X
213 235Right-handed alpha
Helix 42
AE6
Y
7 19Right-handed alpha
Helix 43
AE7
Y
20 34Right-handed alpha
Helix 44
AE8
Y
39 72Right-handed alpha
Helix 45
AE9
Y
76 106Right-handed alpha
Helix 46
AF1
Y
113 135Right-handed alpha
Helix 47
AF2
Y
136 162Right-handed alpha
Helix 48
AF3
Y
166 183Right-handed alpha
Helix 49
AF4
Y
186 204Right-handed alpha
Helix 50
AF5
Y
214 233Right-handed alpha
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There are 6 sheets in PDB entry 13DV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 466first strand
Strand 2
A
469 475anti-parallel
Strand 3
A
479 484anti-parallel
Strand 4
A
527 530anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 584first strand
Strand 2
A
590 592anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 356first strand
Strand 2
B
362 364anti-parallel
Strand 3
B
373 376anti-parallel
Strand 4
B
418 421anti-parallel
Strand 5
B
408 412anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
475 477first strand
Strand 2
B
481 483anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 76first strand
Strand 2
C
80 87anti-parallel
Strand 3
C
93 100anti-parallel
Strand 4
C
138 144anti-parallel
Strand 5
C
129 135anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
197 198first strand
Strand 2
C
204 205anti-parallel
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