Analysis of interatomic Contacts of Structural Units in PDB entry:
13FZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 13FZ entry

There are 4 chains in PDB entry 13FZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 141GLN 1345
B
 U 1 U 13
C
 ALA 141GLN 1345
D
 U 1 U 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 92 helices in PDB entry 13FZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
146 153Right-handed alpha
Helix 2
AA2
A
156 166Right-handed alpha
Helix 3
AA3
A
169 175Right-handed alpha
Helix 4
AA4
A
180 196Right-handed alpha
Helix 5
AA5
A
201 214Right-handed alpha
Helix 6
AA6
A
219 227Right-handed alpha
Helix 7
AA7
A
233 256Right-handed alpha
Helix 8
AA8
A
262 283Right-handed alpha
Helix 9
AA9
A
288 311Right-handed alpha
Helix 10
AB1
A
342 348Right-handed alpha
Helix 11
AB2
A
364 394Right-handed alpha
Helix 12
AB3
A
434 438Right-handed 310
Helix 13
AB4
A
473 479Right-handed alpha
Helix 14
AB5
A
490 496Right-handed alpha
Helix 15
AB6
A
512 525Right-handed alpha
Helix 16
AB7
A
557 562Right-handed alpha
Helix 17
AB8
A
567 574Right-handed alpha
Helix 18
AB9
A
592 597Right-handed alpha
Helix 19
AC1
A
599 611Right-handed alpha
Helix 20
AC2
A
624 639Right-handed alpha
Helix 21
AC3
A
660 673Right-handed alpha
Helix 22
AC4
A
686 691Right-handed alpha
Helix 23
AC5
A
693 700Right-handed alpha
Helix 24
AC6
A
700 707Right-handed alpha
Helix 25
AC7
A
708 739Right-handed alpha
Helix 26
AC8
A
745 750Right-handed 310
Helix 27
AC9
A
754 764Right-handed alpha
Helix 28
AD1
A
770 775Right-handed alpha
Helix 29
AD2
A
790 794Right-handed 310
Helix 30
AD3
A
854 865Right-handed alpha
Helix 31
AD4
A
884 907Right-handed alpha
Helix 32
AD5
A
926 976Right-handed alpha
Helix 33
AD6
A
986 991Right-handed alpha
Helix 34
AD7
A
991 999Right-handed alpha
Helix 35
AD8
A
1012 1020Right-handed alpha
Helix 36
AD9
A
1043 1049Right-handed alpha
Helix 37
AE1
A
1054 1062Right-handed alpha
Helix 38
AE2
A
1076 1081Right-handed alpha
Helix 39
AE3
A
1095 1100Right-handed 310
Helix 40
AE4
A
1130 1146Right-handed alpha
Helix 41
AE5
A
1150 1152Right-handed 310
Helix 42
AE6
A
1160 1170Right-handed alpha
Helix 43
AE7
A
1208 1212Right-handed 310
Helix 44
AE8
A
1213 1221Right-handed alpha
Helix 45
AE9
A
1235 1239Right-handed 310
Helix 46
AF1
A
1240 1251Right-handed alpha
Helix 47
AF2
A
1278 1283Right-handed 310
Helix 48
AF3
C
146 153Right-handed alpha
Helix 49
AF4
C
156 166Right-handed alpha
Helix 50
AF5
C
169 175Right-handed alpha
Helix 51
AF6
C
180 196Right-handed alpha
Helix 52
AF7
C
201 214Right-handed alpha
Helix 53
AF8
C
219 227Right-handed alpha
Helix 54
AF9
C
235 256Right-handed alpha
Helix 55
AG1
C
262 283Right-handed alpha
Helix 56
AG2
C
288 311Right-handed alpha
Helix 57
AG3
C
342 348Right-handed alpha
Helix 58
AG4
C
364 394Right-handed alpha
Helix 59
AG5
C
473 479Right-handed alpha
Helix 60
AG6
C
490 495Right-handed alpha
Helix 61
AG7
C
512 525Right-handed alpha
Helix 62
AG8
C
557 562Right-handed alpha
Helix 63
AG9
C
567 574Right-handed alpha
Helix 64
AH1
C
592 597Right-handed alpha
Helix 65
AH2
C
599 611Right-handed alpha
Helix 66
AH3
C
624 639Right-handed alpha
Helix 67
AH4
C
660 673Right-handed alpha
Helix 68
AH5
C
688 692Right-handed 310
Helix 69
AH6
C
693 700Right-handed alpha
Helix 70
AH7
C
700 707Right-handed alpha
Helix 71
AH8
C
708 741Right-handed alpha
Helix 72
AH9
C
745 750Right-handed 310
Helix 73
AI1
C
754 764Right-handed alpha
Helix 74
AI2
C
769 775Right-handed alpha
Helix 75
AI3
C
780 785Right-handed alpha
Helix 76
AI4
C
854 865Right-handed alpha
Helix 77
AI5
C
885 907Right-handed alpha
Helix 78
AI6
C
926 976Right-handed alpha
Helix 79
AI7
C
986 991Right-handed alpha
Helix 80
AI8
C
991 999Right-handed alpha
Helix 81
AI9
C
1012 1020Right-handed alpha
Helix 82
AJ1
C
1054 1062Right-handed alpha
Helix 83
AJ2
C
1076 1081Right-handed alpha
Helix 84
AJ3
C
1095 1100Right-handed 310
Helix 85
AJ4
C
1130 1146Right-handed alpha
Helix 86
AJ5
C
1150 1152Right-handed 310
Helix 87
AJ6
C
1160 1170Right-handed alpha
Helix 88
AJ7
C
1208 1212Right-handed 310
Helix 89
AJ8
C
1213 1221Right-handed alpha
Helix 90
AJ9
C
1235 1239Right-handed 310
Helix 91
AK1
C
1240 1251Right-handed alpha
Helix 92
AK2
C
1276 1281Right-handed alpha
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There are 12 sheets in PDB entry 13FZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 410first strand
Strand 2
A
504 508anti-parallel
Strand 3
A
453 457anti-parallel
Strand 4
A
464 468anti-parallel
Strand 5
A
481 486anti-parallel
Strand 6
A
425 431anti-parallel
Strand 7
A
415 422anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
677 680first strand
Strand 2
A
980 984parallel
Strand 3
A
652 656parallel
Strand 4
A
1003 1006parallel
Strand 5
A
1027 1031parallel
Strand 6
A
614 618parallel
Strand 7
A
1067 1068parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1071 1072first strand
Strand 2
A
1092 1093parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1181 1183first strand
Strand 2
A
1154 1158parallel
Strand 3
A
1192 1198parallel
Strand 4
A
1224 1231parallel
Strand 5
A
1110 1113parallel
Strand 6
A
1256 1257parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1120 1121first strand
Strand 2
A
1128 1129anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1260 1263first strand
Strand 2
A
1271 1274anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
408 410first strand
Strand 2
C
504 508anti-parallel
Strand 3
C
453 457anti-parallel
Strand 4
C
465 469anti-parallel
Strand 5
C
481 486anti-parallel
Strand 6
C
425 431anti-parallel
Strand 7
C
415 422anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
677 680first strand
Strand 2
C
980 984parallel
Strand 3
C
652 656parallel
Strand 4
C
1003 1006parallel
Strand 5
C
1027 1031parallel
Strand 6
C
614 618parallel
Strand 7
C
1067 1068parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1071 1072first strand
Strand 2
C
1092 1093parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1181 1183first strand
Strand 2
C
1154 1158parallel
Strand 3
C
1192 1198parallel
Strand 4
C
1224 1231parallel
Strand 5
C
1110 1113parallel
Strand 6
C
1256 1257parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1120 1121first strand
Strand 2
C
1128 1129anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1260 1263first strand
Strand 2
C
1271 1274anti-parallel
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