Analysis of interatomic Contacts of Structural Units in PDB entry:
13GO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 13GO entry

There are 4 chains in PDB entry 13GO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 0	GLN 362
B	ALA 0	GLN 362
C	ALA 0	HIS 361
D	ALA 0	HIS 252

There are 82 helices in PDB entry 13GO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	19	Right-handed 310
Helix 2	AA2	A	20	26	Right-handed alpha
Helix 3	AA3	A	36	41	Right-handed alpha
Helix 4	AA4	A	43	53	Right-handed alpha
Helix 5	AA5	A	67	81	Right-handed alpha
Helix 6	AA6	A	91	105	Right-handed alpha
Helix 7	AA7	A	119	123	Right-handed 310
Helix 8	AA8	A	152	157	Right-handed alpha
Helix 9	AA9	A	159	171	Right-handed alpha
Helix 10	AB1	A	171	184	Right-handed alpha
Helix 11	AB2	A	194	211	Right-handed alpha
Helix 12	AB3	A	211	221	Right-handed alpha
Helix 13	AB4	A	225	235	Right-handed alpha
Helix 14	AB5	A	236	246	Right-handed alpha
Helix 15	AB6	A	249	259	Right-handed alpha
Helix 16	AB7	A	263	268	Right-handed 310
Helix 17	AB8	A	269	286	Right-handed alpha
Helix 18	AB9	A	288	303	Right-handed alpha
Helix 19	AC1	A	308	312	Right-handed 310
Helix 20	AC2	A	317	329	Right-handed alpha
Helix 21	AC3	A	333	338	Right-handed 310
Helix 22	AC4	A	343	362	Right-handed alpha
Helix 23	AC5	B	15	19	Right-handed 310
Helix 24	AC6	B	20	28	Right-handed alpha
Helix 25	AC7	B	36	43	Right-handed alpha
Helix 26	AC8	B	43	52	Right-handed alpha
Helix 27	AC9	B	67	81	Right-handed alpha
Helix 28	AD1	B	91	106	Right-handed alpha
Helix 29	AD2	B	152	156	Right-handed alpha
Helix 30	AD3	B	159	171	Right-handed alpha
Helix 31	AD4	B	171	184	Right-handed alpha
Helix 32	AD5	B	194	221	Right-handed alpha
Helix 33	AD6	B	225	235	Right-handed alpha
Helix 34	AD7	B	237	246	Right-handed alpha
Helix 35	AD8	B	249	259	Right-handed alpha
Helix 36	AD9	B	263	268	Right-handed 310
Helix 37	AE1	B	269	285	Right-handed alpha
Helix 38	AE2	B	288	302	Right-handed alpha
Helix 39	AE3	B	317	329	Right-handed alpha
Helix 40	AE4	B	333	338	Right-handed 310
Helix 41	AE5	B	343	362	Right-handed alpha
Helix 42	AE6	C	15	19	Right-handed 310
Helix 43	AE7	C	20	26	Right-handed alpha
Helix 44	AE8	C	36	43	Right-handed alpha
Helix 45	AE9	C	43	52	Right-handed alpha
Helix 46	AF1	C	67	81	Right-handed alpha
Helix 47	AF2	C	91	105	Right-handed alpha
Helix 48	AF3	C	119	123	Right-handed 310
Helix 49	AF4	C	152	157	Right-handed alpha
Helix 50	AF5	C	159	171	Right-handed alpha
Helix 51	AF6	C	172	184	Right-handed alpha
Helix 52	AF7	C	194	221	Right-handed alpha
Helix 53	AF8	C	225	246	Right-handed alpha
Helix 54	AF9	C	249	259	Right-handed alpha
Helix 55	AG1	C	263	268	Right-handed 310
Helix 56	AG2	C	269	285	Right-handed alpha
Helix 57	AG3	C	288	303	Right-handed alpha
Helix 58	AG4	C	308	312	Right-handed 310
Helix 59	AG5	C	317	329	Right-handed alpha
Helix 60	AG6	C	333	338	Right-handed 310
Helix 61	AG7	C	343	359	Right-handed alpha
Helix 62	AG8	D	16	19	Right-handed 310
Helix 63	AG9	D	20	26	Right-handed alpha
Helix 64	AH1	D	36	43	Right-handed alpha
Helix 65	AH2	D	43	53	Right-handed alpha
Helix 66	AH3	D	67	81	Right-handed alpha
Helix 67	AH4	D	91	106	Right-handed alpha
Helix 68	AH5	D	152	157	Right-handed alpha
Helix 69	AH6	D	159	184	Right-handed alpha
Helix 70	AH7	D	194	211	Right-handed alpha
Helix 71	AH8	D	211	221	Right-handed alpha
Helix 72	AH9	D	225	236	Right-handed alpha
Helix 73	AI1	D	236	241	Right-handed alpha
Helix 74	AI2	D	241	246	Right-handed alpha
Helix 75	AI3	D	249	259	Right-handed alpha
Helix 76	AI4	D	263	268	Right-handed 310
Helix 77	AI5	D	269	285	Right-handed alpha
Helix 78	AI6	D	288	303	Right-handed alpha
Helix 79	AI7	D	307	312	Right-handed 310
Helix 80	AI8	D	317	329	Right-handed alpha
Helix 81	AI9	D	333	338	Right-handed 310
Helix 82	AJ1	D	343	359	Right-handed alpha

There are 8 sheets in PDB entry 13GO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	147	151	parallel
Strand 3	A	109	113	parallel
Strand 4	A	85	90	parallel
Strand 5	A	31	35	parallel
Strand 6	A	58	60	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	127	first strand
Strand 2	A	138	140	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	147	151	parallel
Strand 3	B	109	113	parallel
Strand 4	B	85	90	parallel
Strand 5	B	31	35	parallel
Strand 6	B	58	61	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	126	first strand
Strand 2	B	139	140	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	147	151	parallel
Strand 3	C	109	113	parallel
Strand 4	C	85	90	parallel
Strand 5	C	31	35	parallel
Strand 6	C	58	61	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	126	first strand
Strand 2	C	139	140	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	13	first strand
Strand 2	D	147	151	parallel
Strand 3	D	109	113	parallel
Strand 4	D	85	90	parallel
Strand 5	D	31	35	parallel
Strand 6	D	58	61	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	126	first strand
Strand 2	D	139	140	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 13GO

Analysis of interatomic Contacts of Structural Units in PDB entry:
13GO