Analysis of interatomic Contacts of Structural Units in PDB entry:
13HS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 13HS entry

There are 8 chains in PDB entry 13HS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 33	PRO 210
B	GLN 33	PRO 210
C	GLN 33	PRO 210
D	GLN 33	PRO 210
E	GLN 33	PRO 210
F	GLN 33	PRO 210
G	GLN 33	PRO 210
H	GLN 33	PRO 210

There are 27 helices in PDB entry 13HS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	94	111	Right-handed alpha
Helix 2	AA2	A	140	144	Right-handed 310
Helix 3	AA3	A	180	207	Right-handed alpha
Helix 4	AA4	B	94	111	Right-handed alpha
Helix 5	AA5	B	140	144	Right-handed 310
Helix 6	AA6	B	179	207	Right-handed alpha
Helix 7	AA7	C	66	70	Right-handed 310
Helix 8	AA8	C	94	111	Right-handed alpha
Helix 9	AA9	C	141	144	Right-handed 310
Helix 10	AB1	C	179	208	Right-handed alpha
Helix 11	AB2	D	94	111	Right-handed alpha
Helix 12	AB3	D	140	144	Right-handed 310
Helix 13	AB4	D	179	209	Right-handed alpha
Helix 14	AB5	E	94	111	Right-handed alpha
Helix 15	AB6	E	140	144	Right-handed 310
Helix 16	AB7	E	179	208	Right-handed alpha
Helix 17	AB8	F	94	111	Right-handed alpha
Helix 18	AB9	F	141	144	Right-handed 310
Helix 19	AC1	F	179	209	Right-handed alpha
Helix 20	AC2	G	66	71	Right-handed alpha
Helix 21	AC3	G	94	111	Right-handed alpha
Helix 22	AC4	G	140	144	Right-handed 310
Helix 23	AC5	G	180	207	Right-handed alpha
Helix 24	AC6	H	66	71	Right-handed alpha
Helix 25	AC7	H	94	111	Right-handed alpha
Helix 26	AC8	H	140	144	Right-handed 310
Helix 27	AC9	H	180	207	Right-handed alpha

There are 18 sheets in PDB entry 13HS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	38	first strand
Strand 2	A	84	91	parallel
Strand 3	A	73	76	anti-parallel
Strand 4	A	127	139	parallel
Strand 5	A	58	60	parallel
Strand 6	A	116	118	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	38	first strand
Strand 2	A	84	91	parallel
Strand 3	A	73	76	anti-parallel
Strand 4	A	127	139	parallel
Strand 5	A	146	157	anti-parallel
Strand 6	A	162	174	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	38	first strand
Strand 2	B	89	91	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	127	139	parallel
Strand 3	B	58	60	parallel
Strand 4	B	117	118	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	127	139	parallel
Strand 3	B	146	157	anti-parallel
Strand 4	B	163	174	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	76	first strand
Strand 2	B	84	85	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	38	first strand
Strand 2	C	89	91	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	118	first strand
Strand 2	C	58	60	parallel
Strand 3	C	127	139	parallel
Strand 4	C	146	157	anti-parallel
Strand 5	C	163	174	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	118	first strand
Strand 2	C	58	60	parallel
Strand 3	C	127	139	parallel
Strand 4	C	75	77	parallel
Strand 5	C	82	85	anti-parallel
Strand 6	D	36	38	anti-parallel
Strand 7	D	89	91	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	65	first strand
Strand 2	D	127	139	parallel
Strand 3	D	146	157	anti-parallel
Strand 4	D	162	174	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	118	first strand
Strand 2	D	58	60	parallel
Strand 3	D	127	139	parallel
Strand 4	D	75	76	parallel
Strand 5	D	82	85	anti-parallel
Strand 6	E	36	38	anti-parallel
Strand 7	E	89	91	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	117	118	first strand
Strand 2	E	58	60	parallel
Strand 3	E	127	139	parallel
Strand 4	E	146	157	anti-parallel
Strand 5	E	162	174	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	76	first strand
Strand 2	E	82	85	anti-parallel
Strand 3	F	36	38	anti-parallel
Strand 4	F	84	91	parallel
Strand 5	F	73	77	anti-parallel
Strand 6	F	127	139	parallel
Strand 7	F	58	60	parallel
Strand 8	F	116	118	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	76	first strand
Strand 2	E	82	85	anti-parallel
Strand 3	F	36	38	anti-parallel
Strand 4	F	84	91	parallel
Strand 5	F	73	77	anti-parallel
Strand 6	F	127	139	parallel
Strand 7	F	146	157	anti-parallel
Strand 8	F	162	174	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	36	38	first strand
Strand 2	G	84	91	parallel
Strand 3	G	73	76	anti-parallel
Strand 4	G	127	139	parallel
Strand 5	G	58	60	parallel
Strand 6	G	116	118	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	36	38	first strand
Strand 2	G	84	91	parallel
Strand 3	G	73	76	anti-parallel
Strand 4	G	127	139	parallel
Strand 5	G	146	157	anti-parallel
Strand 6	G	162	174	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	36	38	first strand
Strand 2	H	84	91	parallel
Strand 3	H	73	76	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	116	118	first strand
Strand 2	H	58	60	parallel
Strand 3	H	127	139	parallel
Strand 4	H	146	157	anti-parallel
Strand 5	H	162	174	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 13HS

Analysis of interatomic Contacts of Structural Units in PDB entry:
13HS