Analysis of interatomic Contacts of Structural Units in PDB entry:
13JQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 13JQ entry

There is 1 chain in PDB entry 13JQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 192LEU 978
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 13JQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
192 197Right-handed alpha
Helix 2
AA2
A
220 235Right-handed alpha
Helix 3
AA3
A
244 255Right-handed alpha
Helix 4
AA4
A
294 299Right-handed alpha
Helix 5
AA5
A
366 371Right-handed 310
Helix 6
AA6
A
390 418Right-handed alpha
Helix 7
AA7
A
432 437Right-handed alpha
Helix 8
AA8
A
444 460Right-handed alpha
Helix 9
AA9
A
475 489Right-handed alpha
Helix 10
AB1
A
500 515Right-handed alpha
Helix 11
AB2
A
530 544Right-handed alpha
Helix 12
AB3
A
553 557Right-handed 310
Helix 13
AB4
A
572 576Right-handed 310
Helix 14
AB5
A
577 588Right-handed alpha
Helix 15
AB6
A
602 609Right-handed alpha
Helix 16
AB7
A
636 649Right-handed alpha
Helix 17
AB8
A
660 662Right-handed 310
Helix 18
AB9
A
663 675Right-handed alpha
Helix 19
AC1
A
688 702Right-handed alpha
Helix 20
AC2
A
712 717Right-handed alpha
Helix 21
AC3
A
729 733Right-handed 310
Helix 22
AC4
A
734 744Right-handed alpha
Helix 23
AC5
A
763 774Right-handed alpha
Helix 24
AC6
A
780 800Right-handed alpha
Helix 25
AC7
A
802 827Right-handed alpha
Helix 26
AC8
A
854 868Right-handed alpha
Helix 27
AC9
A
870 886Right-handed alpha
Helix 28
AD1
A
889 908Right-handed alpha
Helix 29
AD2
A
932 938Right-handed alpha
Helix 30
AD3
A
960 962Right-handed 310
Helix 31
AD4
A
963 973Right-handed alpha
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There are 6 sheets in PDB entry 13JQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 213first strand
Strand 2
A
284 286anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 262first strand
Strand 2
A
273 277parallel
Strand 3
A
237 242parallel
Strand 4
A
289 293parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 309first strand
Strand 2
A
628 634anti-parallel
Strand 3
A
752 758parallel
Strand 4
A
724 727parallel
Strand 5
A
654 657parallel
Strand 6
A
706 709parallel
Strand 7
A
680 683parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 364first strand
Strand 2
A
346 354anti-parallel
Strand 3
A
331 343anti-parallel
Strand 4
A
324 327anti-parallel
Strand 5
A
372 374anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
522 525first strand
Strand 2
A
548 551parallel
Strand 3
A
493 497parallel
Strand 4
A
565 570parallel
Strand 5
A
593 597parallel
Strand 6
A
465 470parallel
Strand 7
A
614 618parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
838 840first strand
Strand 2
A
912 915parallel
Strand 3
A
919 923anti-parallel
Strand 4
A
951 955anti-parallel
Strand 5
A
943 946anti-parallel
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