Analysis of interatomic Contacts of Structural Units in PDB entry:
13LJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 13LJ entry

There are 4 chains in PDB entry 13LJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 118	VAL 756
B	ARG 118	VAL 756
C	ARG 118	VAL 756
D	ARG 118	VAL 756

There are136 helices in PDB entry 13LJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	119	130	Right-handed alpha
Helix 2	AA2	A	131	146	Right-handed alpha
Helix 3	AA3	A	147	149	Right-handed 310
Helix 4	AA4	A	153	161	Right-handed alpha
Helix 5	AA5	A	170	178	Right-handed alpha
Helix 6	AA6	A	182	195	Right-handed alpha
Helix 7	AA7	A	199	204	Right-handed alpha
Helix 8	AA8	A	217	225	Right-handed alpha
Helix 9	AA9	A	227	238	Right-handed alpha
Helix 10	AB1	A	264	272	Right-handed alpha
Helix 11	AB2	A	274	283	Right-handed alpha
Helix 12	AB3	A	298	307	Right-handed alpha
Helix 13	AB4	A	315	329	Right-handed alpha
Helix 14	AB5	A	331	336	Right-handed alpha
Helix 15	AB6	A	343	351	Right-handed alpha
Helix 16	AB7	A	353	362	Right-handed alpha
Helix 17	AB8	A	370	374	Right-handed 310
Helix 18	AB9	A	402	409	Right-handed alpha
Helix 19	AC1	A	415	419	Right-handed 310
Helix 20	AC2	A	422	436	Right-handed alpha
Helix 21	AC3	A	439	461	Right-handed alpha
Helix 22	AC4	A	482	488	Right-handed alpha
Helix 23	AC5	A	488	493	Right-handed alpha
Helix 24	AC6	A	494	507	Right-handed alpha
Helix 25	AC7	A	515	520	Right-handed alpha
Helix 26	AC8	A	520	542	Right-handed alpha
Helix 27	AC9	A	546	561	Right-handed alpha
Helix 28	AD1	A	569	586	Right-handed alpha
Helix 29	AD2	A	586	608	Right-handed alpha
Helix 30	AD3	A	624	637	Right-handed alpha
Helix 31	AD4	A	650	666	Right-handed alpha
Helix 32	AD5	A	668	685	Right-handed alpha
Helix 33	AD6	A	687	705	Right-handed alpha
Helix 34	AD7	A	708	713	Right-handed alpha
Helix 35	AD8	B	119	130	Right-handed alpha
Helix 36	AD9	B	131	146	Right-handed alpha
Helix 37	AE1	B	147	149	Right-handed 310
Helix 38	AE2	B	153	161	Right-handed alpha
Helix 39	AE3	B	170	178	Right-handed alpha
Helix 40	AE4	B	182	195	Right-handed alpha
Helix 41	AE5	B	199	204	Right-handed alpha
Helix 42	AE6	B	217	225	Right-handed alpha
Helix 43	AE7	B	227	238	Right-handed alpha
Helix 44	AE8	B	264	272	Right-handed alpha
Helix 45	AE9	B	274	283	Right-handed alpha
Helix 46	AF1	B	298	307	Right-handed alpha
Helix 47	AF2	B	315	329	Right-handed alpha
Helix 48	AF3	B	331	336	Right-handed alpha
Helix 49	AF4	B	343	351	Right-handed alpha
Helix 50	AF5	B	353	362	Right-handed alpha
Helix 51	AF6	B	370	374	Right-handed 310
Helix 52	AF7	B	402	409	Right-handed alpha
Helix 53	AF8	B	415	419	Right-handed 310
Helix 54	AF9	B	422	436	Right-handed alpha
Helix 55	AG1	B	439	461	Right-handed alpha
Helix 56	AG2	B	482	488	Right-handed alpha
Helix 57	AG3	B	488	493	Right-handed alpha
Helix 58	AG4	B	494	507	Right-handed alpha
Helix 59	AG5	B	515	520	Right-handed alpha
Helix 60	AG6	B	520	542	Right-handed alpha
Helix 61	AG7	B	546	561	Right-handed alpha
Helix 62	AG8	B	569	586	Right-handed alpha
Helix 63	AG9	B	586	608	Right-handed alpha
Helix 64	AH1	B	624	637	Right-handed alpha
Helix 65	AH2	B	650	666	Right-handed alpha
Helix 66	AH3	B	668	685	Right-handed alpha
Helix 67	AH4	B	687	705	Right-handed alpha
Helix 68	AH5	B	708	713	Right-handed alpha
Helix 69	AH6	C	119	130	Right-handed alpha
Helix 70	AH7	C	131	146	Right-handed alpha
Helix 71	AH8	C	147	149	Right-handed 310
Helix 72	AH9	C	153	161	Right-handed alpha
Helix 73	AI1	C	170	178	Right-handed alpha
Helix 74	AI2	C	182	195	Right-handed alpha
Helix 75	AI3	C	199	204	Right-handed alpha
Helix 76	AI4	C	217	225	Right-handed alpha
Helix 77	AI5	C	227	238	Right-handed alpha
Helix 78	AI6	C	264	272	Right-handed alpha
Helix 79	AI7	C	274	283	Right-handed alpha
Helix 80	AI8	C	298	307	Right-handed alpha
Helix 81	AI9	C	315	329	Right-handed alpha
Helix 82	AJ1	C	331	336	Right-handed alpha
Helix 83	AJ2	C	343	351	Right-handed alpha
Helix 84	AJ3	C	353	362	Right-handed alpha
Helix 85	AJ4	C	370	374	Right-handed 310
Helix 86	AJ5	C	402	409	Right-handed alpha
Helix 87	AJ6	C	415	419	Right-handed 310
Helix 88	AJ7	C	422	436	Right-handed alpha
Helix 89	AJ8	C	439	461	Right-handed alpha
Helix 90	AJ9	C	482	488	Right-handed alpha
Helix 91	AK1	C	488	493	Right-handed alpha
Helix 92	AK2	C	494	507	Right-handed alpha
Helix 93	AK3	C	515	520	Right-handed alpha
Helix 94	AK4	C	520	542	Right-handed alpha
Helix 95	AK5	C	546	561	Right-handed alpha
Helix 96	AK6	C	569	586	Right-handed alpha
Helix 97	AK7	C	586	608	Right-handed alpha
Helix 98	AK8	C	624	637	Right-handed alpha
Helix 99	AK9	C	650	666	Right-handed alpha
Helix 100	AL1	C	668	685	Right-handed alpha
Helix 101	AL2	C	687	705	Right-handed alpha
Helix 102	AL3	C	708	713	Right-handed alpha
Helix 103	AL4	D	119	130	Right-handed alpha
Helix 104	AL5	D	131	146	Right-handed alpha
Helix 105	AL6	D	147	149	Right-handed 310
Helix 106	AL7	D	153	161	Right-handed alpha
Helix 107	AL8	D	170	178	Right-handed alpha
Helix 108	AL9	D	182	195	Right-handed alpha
Helix 109	AM1	D	199	204	Right-handed alpha
Helix 110	AM2	D	217	225	Right-handed alpha
Helix 111	AM3	D	227	238	Right-handed alpha
Helix 112	AM4	D	264	272	Right-handed alpha
Helix 113	AM5	D	274	283	Right-handed alpha
Helix 114	AM6	D	298	307	Right-handed alpha
Helix 115	AM7	D	315	329	Right-handed alpha
Helix 116	AM8	D	331	336	Right-handed alpha
Helix 117	AM9	D	343	351	Right-handed alpha
Helix 118	AN1	D	353	362	Right-handed alpha
Helix 119	AN2	D	370	374	Right-handed 310
Helix 120	AN3	D	402	409	Right-handed alpha
Helix 121	AN4	D	415	419	Right-handed 310
Helix 122	AN5	D	422	436	Right-handed alpha
Helix 123	AN6	D	439	461	Right-handed alpha
Helix 124	AN7	D	482	488	Right-handed alpha
Helix 125	AN8	D	488	493	Right-handed alpha
Helix 126	AN9	D	494	507	Right-handed alpha
Helix 127	AO1	D	515	520	Right-handed alpha
Helix 128	AO2	D	520	542	Right-handed alpha
Helix 129	AO3	D	546	561	Right-handed alpha
Helix 130	AO4	D	569	586	Right-handed alpha
Helix 131	AO5	D	586	608	Right-handed alpha
Helix 132	AO6	D	624	637	Right-handed alpha
Helix 133	AO7	D	650	666	Right-handed alpha
Helix 134	AO8	D	668	685	Right-handed alpha
Helix 135	AO9	D	687	705	Right-handed alpha
Helix 136	AP1	D	708	713	Right-handed alpha

There are 4 sheets in PDB entry 13LJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	382	first strand
Strand 2	A	385	391	anti-parallel
Strand 3	A	727	737	anti-parallel
Strand 4	A	719	724	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	382	first strand
Strand 2	B	385	391	anti-parallel
Strand 3	B	727	737	anti-parallel
Strand 4	B	719	724	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	382	first strand
Strand 2	C	385	391	anti-parallel
Strand 3	C	727	737	anti-parallel
Strand 4	C	719	724	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	376	382	first strand
Strand 2	D	385	391	anti-parallel
Strand 3	D	727	737	anti-parallel
Strand 4	D	719	724	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 13LJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
13LJ