Analysis of interatomic Contacts of Structural Units in PDB entry:
13LL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 13LL entry

There are 4 chains in PDB entry 13LL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 118	VAL 756
B	ARG 118	VAL 756
C	ARG 118	VAL 756
D	ARG 118	VAL 756

There are136 helices in PDB entry 13LL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	118	130	Right-handed alpha
Helix 2	AA2	A	131	148	Right-handed alpha
Helix 3	AA3	A	150	152	Right-handed 310
Helix 4	AA4	A	153	159	Right-handed alpha
Helix 5	AA5	A	160	162	Right-handed 310
Helix 6	AA6	A	170	178	Right-handed alpha
Helix 7	AA7	A	182	197	Right-handed alpha
Helix 8	AA8	A	199	204	Right-handed alpha
Helix 9	AA9	A	217	225	Right-handed alpha
Helix 10	AB1	A	227	237	Right-handed alpha
Helix 11	AB2	A	264	272	Right-handed alpha
Helix 12	AB3	A	274	283	Right-handed alpha
Helix 13	AB4	A	298	306	Right-handed alpha
Helix 14	AB5	A	315	329	Right-handed alpha
Helix 15	AB6	A	331	336	Right-handed alpha
Helix 16	AB7	A	345	352	Right-handed alpha
Helix 17	AB8	A	353	362	Right-handed alpha
Helix 18	AB9	A	402	409	Right-handed alpha
Helix 19	AC1	A	415	420	Right-handed alpha
Helix 20	AC2	A	422	434	Right-handed alpha
Helix 21	AC3	A	439	460	Right-handed alpha
Helix 22	AC4	A	480	507	Right-handed alpha
Helix 23	AC5	A	513	519	Right-handed alpha
Helix 24	AC6	A	520	541	Right-handed alpha
Helix 25	AC7	A	546	561	Right-handed alpha
Helix 26	AC8	A	562	568	Right-handed 310
Helix 27	AC9	A	569	576	Right-handed alpha
Helix 28	AD1	A	579	584	Right-handed alpha
Helix 29	AD2	A	586	607	Right-handed alpha
Helix 30	AD3	A	624	638	Right-handed alpha
Helix 31	AD4	A	650	666	Right-handed alpha
Helix 32	AD5	A	668	685	Right-handed alpha
Helix 33	AD6	A	688	707	Right-handed alpha
Helix 34	AD7	A	708	713	Right-handed alpha
Helix 35	AD8	B	119	130	Right-handed alpha
Helix 36	AD9	B	131	148	Right-handed alpha
Helix 37	AE1	B	150	152	Right-handed 310
Helix 38	AE2	B	153	159	Right-handed alpha
Helix 39	AE3	B	160	162	Right-handed 310
Helix 40	AE4	B	170	178	Right-handed alpha
Helix 41	AE5	B	182	197	Right-handed alpha
Helix 42	AE6	B	199	204	Right-handed alpha
Helix 43	AE7	B	217	225	Right-handed alpha
Helix 44	AE8	B	227	237	Right-handed alpha
Helix 45	AE9	B	264	272	Right-handed alpha
Helix 46	AF1	B	274	283	Right-handed alpha
Helix 47	AF2	B	298	306	Right-handed alpha
Helix 48	AF3	B	315	329	Right-handed alpha
Helix 49	AF4	B	331	336	Right-handed alpha
Helix 50	AF5	B	345	352	Right-handed alpha
Helix 51	AF6	B	353	362	Right-handed alpha
Helix 52	AF7	B	402	409	Right-handed alpha
Helix 53	AF8	B	415	420	Right-handed alpha
Helix 54	AF9	B	422	434	Right-handed alpha
Helix 55	AG1	B	439	460	Right-handed alpha
Helix 56	AG2	B	480	507	Right-handed alpha
Helix 57	AG3	B	513	519	Right-handed alpha
Helix 58	AG4	B	520	541	Right-handed alpha
Helix 59	AG5	B	546	561	Right-handed alpha
Helix 60	AG6	B	562	568	Right-handed 310
Helix 61	AG7	B	569	576	Right-handed alpha
Helix 62	AG8	B	579	584	Right-handed alpha
Helix 63	AG9	B	586	607	Right-handed alpha
Helix 64	AH1	B	624	638	Right-handed alpha
Helix 65	AH2	B	650	666	Right-handed alpha
Helix 66	AH3	B	668	685	Right-handed alpha
Helix 67	AH4	B	688	707	Right-handed alpha
Helix 68	AH5	B	708	713	Right-handed alpha
Helix 69	AH6	C	119	130	Right-handed alpha
Helix 70	AH7	C	131	148	Right-handed alpha
Helix 71	AH8	C	150	152	Right-handed 310
Helix 72	AH9	C	153	159	Right-handed alpha
Helix 73	AI1	C	160	162	Right-handed 310
Helix 74	AI2	C	170	178	Right-handed alpha
Helix 75	AI3	C	182	197	Right-handed alpha
Helix 76	AI4	C	199	204	Right-handed alpha
Helix 77	AI5	C	217	225	Right-handed alpha
Helix 78	AI6	C	227	237	Right-handed alpha
Helix 79	AI7	C	264	272	Right-handed alpha
Helix 80	AI8	C	274	283	Right-handed alpha
Helix 81	AI9	C	298	306	Right-handed alpha
Helix 82	AJ1	C	315	329	Right-handed alpha
Helix 83	AJ2	C	331	336	Right-handed alpha
Helix 84	AJ3	C	345	352	Right-handed alpha
Helix 85	AJ4	C	353	362	Right-handed alpha
Helix 86	AJ5	C	402	409	Right-handed alpha
Helix 87	AJ6	C	415	420	Right-handed alpha
Helix 88	AJ7	C	422	434	Right-handed alpha
Helix 89	AJ8	C	439	460	Right-handed alpha
Helix 90	AJ9	C	480	507	Right-handed alpha
Helix 91	AK1	C	513	519	Right-handed alpha
Helix 92	AK2	C	520	541	Right-handed alpha
Helix 93	AK3	C	546	561	Right-handed alpha
Helix 94	AK4	C	562	568	Right-handed 310
Helix 95	AK5	C	569	576	Right-handed alpha
Helix 96	AK6	C	579	584	Right-handed alpha
Helix 97	AK7	C	586	607	Right-handed alpha
Helix 98	AK8	C	624	638	Right-handed alpha
Helix 99	AK9	C	650	666	Right-handed alpha
Helix 100	AL1	C	668	685	Right-handed alpha
Helix 101	AL2	C	688	707	Right-handed alpha
Helix 102	AL3	C	708	713	Right-handed alpha
Helix 103	AL4	D	119	130	Right-handed alpha
Helix 104	AL5	D	131	148	Right-handed alpha
Helix 105	AL6	D	150	152	Right-handed 310
Helix 106	AL7	D	153	159	Right-handed alpha
Helix 107	AL8	D	160	162	Right-handed 310
Helix 108	AL9	D	170	178	Right-handed alpha
Helix 109	AM1	D	182	197	Right-handed alpha
Helix 110	AM2	D	199	204	Right-handed alpha
Helix 111	AM3	D	217	225	Right-handed alpha
Helix 112	AM4	D	227	237	Right-handed alpha
Helix 113	AM5	D	264	272	Right-handed alpha
Helix 114	AM6	D	274	283	Right-handed alpha
Helix 115	AM7	D	298	306	Right-handed alpha
Helix 116	AM8	D	315	329	Right-handed alpha
Helix 117	AM9	D	331	336	Right-handed alpha
Helix 118	AN1	D	345	352	Right-handed alpha
Helix 119	AN2	D	353	362	Right-handed alpha
Helix 120	AN3	D	402	409	Right-handed alpha
Helix 121	AN4	D	415	420	Right-handed alpha
Helix 122	AN5	D	422	434	Right-handed alpha
Helix 123	AN6	D	439	460	Right-handed alpha
Helix 124	AN7	D	480	507	Right-handed alpha
Helix 125	AN8	D	513	519	Right-handed alpha
Helix 126	AN9	D	520	541	Right-handed alpha
Helix 127	AO1	D	546	561	Right-handed alpha
Helix 128	AO2	D	562	568	Right-handed 310
Helix 129	AO3	D	569	576	Right-handed alpha
Helix 130	AO4	D	579	584	Right-handed alpha
Helix 131	AO5	D	586	607	Right-handed alpha
Helix 132	AO6	D	624	638	Right-handed alpha
Helix 133	AO7	D	650	666	Right-handed alpha
Helix 134	AO8	D	668	685	Right-handed alpha
Helix 135	AO9	D	688	707	Right-handed alpha
Helix 136	AP1	D	708	713	Right-handed alpha

There are 4 sheets in PDB entry 13LL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	382	first strand
Strand 2	A	385	391	anti-parallel
Strand 3	A	727	737	anti-parallel
Strand 4	A	719	724	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	382	first strand
Strand 2	B	385	391	anti-parallel
Strand 3	B	727	737	anti-parallel
Strand 4	B	719	724	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	382	first strand
Strand 2	C	385	391	anti-parallel
Strand 3	C	727	737	anti-parallel
Strand 4	C	719	724	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	376	382	first strand
Strand 2	D	385	391	anti-parallel
Strand 3	D	727	737	anti-parallel
Strand 4	D	719	724	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 13LL

Analysis of interatomic Contacts of Structural Units in PDB entry:
13LL