Analysis of interatomic Contacts of Structural Units in PDB entry:
13LM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 13LM entry

There are 4 chains in PDB entry 13LM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 59	GLU 751
B	THR 59	GLU 751
C	THR 59	GLU 751
D	THR 59	GLU 751

There are144 helices in PDB entry 13LM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	119	130	Right-handed alpha
Helix 2	AA2	A	131	150	Right-handed alpha
Helix 3	AA3	A	153	163	Right-handed alpha
Helix 4	AA4	A	170	178	Right-handed alpha
Helix 5	AA5	A	182	197	Right-handed alpha
Helix 6	AA6	A	199	204	Right-handed alpha
Helix 7	AA7	A	217	225	Right-handed alpha
Helix 8	AA8	A	227	236	Right-handed alpha
Helix 9	AA9	A	264	272	Right-handed alpha
Helix 10	AB1	A	274	282	Right-handed alpha
Helix 11	AB2	A	298	306	Right-handed alpha
Helix 12	AB3	A	316	329	Right-handed alpha
Helix 13	AB4	A	343	351	Right-handed alpha
Helix 14	AB5	A	355	362	Right-handed alpha
Helix 15	AB6	A	370	374	Right-handed 310
Helix 16	AB7	A	402	409	Right-handed alpha
Helix 17	AB8	A	416	421	Right-handed alpha
Helix 18	AB9	A	422	434	Right-handed alpha
Helix 19	AC1	A	438	461	Right-handed alpha
Helix 20	AC2	A	481	494	Right-handed alpha
Helix 21	AC3	A	494	507	Right-handed alpha
Helix 22	AC4	A	511	515	Right-handed 310
Helix 23	AC5	A	521	542	Right-handed alpha
Helix 24	AC6	A	546	561	Right-handed alpha
Helix 25	AC7	A	563	569	Right-handed 310
Helix 26	AC8	A	570	574	Right-handed 310
Helix 27	AC9	A	578	586	Right-handed alpha
Helix 28	AD1	A	586	607	Right-handed alpha
Helix 29	AD2	A	625	637	Right-handed alpha
Helix 30	AD3	A	652	666	Right-handed alpha
Helix 31	AD4	A	669	672	Right-handed 310
Helix 32	AD5	A	673	687	Right-handed alpha
Helix 33	AD6	A	689	706	Right-handed alpha
Helix 34	AD7	A	708	713	Right-handed alpha
Helix 35	AD8	A	714	716	Right-handed 310
Helix 36	AD9	A	738	751	Right-handed alpha
Helix 37	AE1	B	119	130	Right-handed alpha
Helix 38	AE2	B	131	150	Right-handed alpha
Helix 39	AE3	B	153	163	Right-handed alpha
Helix 40	AE4	B	170	178	Right-handed alpha
Helix 41	AE5	B	182	197	Right-handed alpha
Helix 42	AE6	B	199	204	Right-handed alpha
Helix 43	AE7	B	217	225	Right-handed alpha
Helix 44	AE8	B	227	236	Right-handed alpha
Helix 45	AE9	B	264	272	Right-handed alpha
Helix 46	AF1	B	274	282	Right-handed alpha
Helix 47	AF2	B	298	306	Right-handed alpha
Helix 48	AF3	B	316	329	Right-handed alpha
Helix 49	AF4	B	343	351	Right-handed alpha
Helix 50	AF5	B	355	362	Right-handed alpha
Helix 51	AF6	B	370	374	Right-handed 310
Helix 52	AF7	B	402	409	Right-handed alpha
Helix 53	AF8	B	416	421	Right-handed alpha
Helix 54	AF9	B	422	434	Right-handed alpha
Helix 55	AG1	B	438	461	Right-handed alpha
Helix 56	AG2	B	481	494	Right-handed alpha
Helix 57	AG3	B	494	507	Right-handed alpha
Helix 58	AG4	B	511	515	Right-handed 310
Helix 59	AG5	B	521	542	Right-handed alpha
Helix 60	AG6	B	546	561	Right-handed alpha
Helix 61	AG7	B	563	569	Right-handed 310
Helix 62	AG8	B	570	574	Right-handed 310
Helix 63	AG9	B	578	586	Right-handed alpha
Helix 64	AH1	B	586	607	Right-handed alpha
Helix 65	AH2	B	625	637	Right-handed alpha
Helix 66	AH3	B	652	666	Right-handed alpha
Helix 67	AH4	B	669	672	Right-handed 310
Helix 68	AH5	B	673	687	Right-handed alpha
Helix 69	AH6	B	689	706	Right-handed alpha
Helix 70	AH7	B	708	713	Right-handed alpha
Helix 71	AH8	B	714	716	Right-handed 310
Helix 72	AH9	B	738	751	Right-handed alpha
Helix 73	AI1	C	119	130	Right-handed alpha
Helix 74	AI2	C	131	150	Right-handed alpha
Helix 75	AI3	C	153	163	Right-handed alpha
Helix 76	AI4	C	170	178	Right-handed alpha
Helix 77	AI5	C	182	197	Right-handed alpha
Helix 78	AI6	C	199	204	Right-handed alpha
Helix 79	AI7	C	217	225	Right-handed alpha
Helix 80	AI8	C	227	236	Right-handed alpha
Helix 81	AI9	C	264	272	Right-handed alpha
Helix 82	AJ1	C	274	282	Right-handed alpha
Helix 83	AJ2	C	298	306	Right-handed alpha
Helix 84	AJ3	C	316	329	Right-handed alpha
Helix 85	AJ4	C	343	351	Right-handed alpha
Helix 86	AJ5	C	355	362	Right-handed alpha
Helix 87	AJ6	C	370	374	Right-handed 310
Helix 88	AJ7	C	402	409	Right-handed alpha
Helix 89	AJ8	C	416	421	Right-handed alpha
Helix 90	AJ9	C	422	434	Right-handed alpha
Helix 91	AK1	C	438	461	Right-handed alpha
Helix 92	AK2	C	481	494	Right-handed alpha
Helix 93	AK3	C	494	507	Right-handed alpha
Helix 94	AK4	C	511	515	Right-handed 310
Helix 95	AK5	C	521	542	Right-handed alpha
Helix 96	AK6	C	546	561	Right-handed alpha
Helix 97	AK7	C	563	569	Right-handed 310
Helix 98	AK8	C	570	574	Right-handed 310
Helix 99	AK9	C	578	586	Right-handed alpha
Helix 100	AL1	C	586	607	Right-handed alpha
Helix 101	AL2	C	625	637	Right-handed alpha
Helix 102	AL3	C	652	666	Right-handed alpha
Helix 103	AL4	C	669	672	Right-handed 310
Helix 104	AL5	C	673	687	Right-handed alpha
Helix 105	AL6	C	689	706	Right-handed alpha
Helix 106	AL7	C	708	713	Right-handed alpha
Helix 107	AL8	C	714	716	Right-handed 310
Helix 108	AL9	C	738	751	Right-handed alpha
Helix 109	AM1	D	119	130	Right-handed alpha
Helix 110	AM2	D	131	150	Right-handed alpha
Helix 111	AM3	D	153	163	Right-handed alpha
Helix 112	AM4	D	170	178	Right-handed alpha
Helix 113	AM5	D	182	197	Right-handed alpha
Helix 114	AM6	D	199	204	Right-handed alpha
Helix 115	AM7	D	217	225	Right-handed alpha
Helix 116	AM8	D	227	236	Right-handed alpha
Helix 117	AM9	D	264	272	Right-handed alpha
Helix 118	AN1	D	274	282	Right-handed alpha
Helix 119	AN2	D	298	306	Right-handed alpha
Helix 120	AN3	D	316	329	Right-handed alpha
Helix 121	AN4	D	343	351	Right-handed alpha
Helix 122	AN5	D	355	362	Right-handed alpha
Helix 123	AN6	D	370	374	Right-handed 310
Helix 124	AN7	D	402	409	Right-handed alpha
Helix 125	AN8	D	416	421	Right-handed alpha
Helix 126	AN9	D	422	434	Right-handed alpha
Helix 127	AO1	D	438	461	Right-handed alpha
Helix 128	AO2	D	481	494	Right-handed alpha
Helix 129	AO3	D	494	507	Right-handed alpha
Helix 130	AO4	D	511	515	Right-handed 310
Helix 131	AO5	D	521	542	Right-handed alpha
Helix 132	AO6	D	546	561	Right-handed alpha
Helix 133	AO7	D	563	569	Right-handed 310
Helix 134	AO8	D	570	574	Right-handed 310
Helix 135	AO9	D	578	586	Right-handed alpha
Helix 136	AP1	D	586	607	Right-handed alpha
Helix 137	AP2	D	625	637	Right-handed alpha
Helix 138	AP3	D	652	666	Right-handed alpha
Helix 139	AP4	D	669	672	Right-handed 310
Helix 140	AP5	D	673	687	Right-handed alpha
Helix 141	AP6	D	689	706	Right-handed alpha
Helix 142	AP7	D	708	713	Right-handed alpha
Helix 143	AP8	D	714	716	Right-handed 310
Helix 144	AP9	D	738	751	Right-handed alpha

There are 8 sheets in PDB entry 13LM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	382	first strand
Strand 2	A	385	390	anti-parallel
Strand 3	A	732	737	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	721	723	first strand
Strand 2	A	727	729	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	382	first strand
Strand 2	B	385	390	anti-parallel
Strand 3	B	732	737	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	721	723	first strand
Strand 2	B	727	729	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	380	382	first strand
Strand 2	C	385	390	anti-parallel
Strand 3	C	732	737	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	721	723	first strand
Strand 2	C	727	729	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	380	382	first strand
Strand 2	D	385	390	anti-parallel
Strand 3	D	732	737	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	721	723	first strand
Strand 2	D	727	729	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 13LM

Analysis of interatomic Contacts of Structural Units in PDB entry:
13LM