Analysis of interatomic Contacts of Structural Units in PDB entry:
13LO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 13LO entry

There are 4 chains in PDB entry 13LO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 118	VAL 756
B	ARG 118	VAL 756
C	ARG 118	VAL 756
D	ARG 118	VAL 756

There are132 helices in PDB entry 13LO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	118	127	Right-handed alpha
Helix 2	AA2	A	132	148	Right-handed alpha
Helix 3	AA3	A	153	161	Right-handed alpha
Helix 4	AA4	A	170	178	Right-handed alpha
Helix 5	AA5	A	182	197	Right-handed alpha
Helix 6	AA6	A	218	223	Right-handed alpha
Helix 7	AA7	A	227	238	Right-handed alpha
Helix 8	AA8	A	264	272	Right-handed alpha
Helix 9	AA9	A	274	284	Right-handed alpha
Helix 10	AB1	A	298	307	Right-handed alpha
Helix 11	AB2	A	315	329	Right-handed alpha
Helix 12	AB3	A	331	335	Right-handed 310
Helix 13	AB4	A	345	351	Right-handed alpha
Helix 14	AB5	A	355	362	Right-handed alpha
Helix 15	AB6	A	402	409	Right-handed alpha
Helix 16	AB7	A	415	420	Right-handed alpha
Helix 17	AB8	A	422	434	Right-handed alpha
Helix 18	AB9	A	442	461	Right-handed alpha
Helix 19	AC1	A	477	507	Right-handed alpha
Helix 20	AC2	A	521	536	Right-handed alpha
Helix 21	AC3	A	547	561	Right-handed alpha
Helix 22	AC4	A	562	564	Right-handed 310
Helix 23	AC5	A	569	573	Right-handed 310
Helix 24	AC6	A	574	579	Right-handed alpha
Helix 25	AC7	A	579	584	Right-handed alpha
Helix 26	AC8	A	590	607	Right-handed alpha
Helix 27	AC9	A	624	634	Right-handed alpha
Helix 28	AD1	A	652	660	Right-handed alpha
Helix 29	AD2	A	660	665	Right-handed alpha
Helix 30	AD3	A	669	678	Right-handed alpha
Helix 31	AD4	A	679	686	Right-handed alpha
Helix 32	AD5	A	687	707	Right-handed alpha
Helix 33	AD6	A	708	713	Right-handed alpha
Helix 34	AD7	B	119	127	Right-handed alpha
Helix 35	AD8	B	132	148	Right-handed alpha
Helix 36	AD9	B	153	161	Right-handed alpha
Helix 37	AE1	B	170	178	Right-handed alpha
Helix 38	AE2	B	182	197	Right-handed alpha
Helix 39	AE3	B	218	223	Right-handed alpha
Helix 40	AE4	B	227	238	Right-handed alpha
Helix 41	AE5	B	264	272	Right-handed alpha
Helix 42	AE6	B	274	284	Right-handed alpha
Helix 43	AE7	B	298	307	Right-handed alpha
Helix 44	AE8	B	315	329	Right-handed alpha
Helix 45	AE9	B	331	335	Right-handed 310
Helix 46	AF1	B	345	351	Right-handed alpha
Helix 47	AF2	B	355	362	Right-handed alpha
Helix 48	AF3	B	402	409	Right-handed alpha
Helix 49	AF4	B	415	420	Right-handed alpha
Helix 50	AF5	B	422	434	Right-handed alpha
Helix 51	AF6	B	442	461	Right-handed alpha
Helix 52	AF7	B	477	507	Right-handed alpha
Helix 53	AF8	B	521	536	Right-handed alpha
Helix 54	AF9	B	547	561	Right-handed alpha
Helix 55	AG1	B	562	564	Right-handed 310
Helix 56	AG2	B	569	573	Right-handed 310
Helix 57	AG3	B	574	579	Right-handed alpha
Helix 58	AG4	B	579	584	Right-handed alpha
Helix 59	AG5	B	590	607	Right-handed alpha
Helix 60	AG6	B	624	634	Right-handed alpha
Helix 61	AG7	B	652	660	Right-handed alpha
Helix 62	AG8	B	660	665	Right-handed alpha
Helix 63	AG9	B	669	678	Right-handed alpha
Helix 64	AH1	B	679	686	Right-handed alpha
Helix 65	AH2	B	687	707	Right-handed alpha
Helix 66	AH3	B	708	713	Right-handed alpha
Helix 67	AH4	C	119	127	Right-handed alpha
Helix 68	AH5	C	132	148	Right-handed alpha
Helix 69	AH6	C	153	161	Right-handed alpha
Helix 70	AH7	C	170	178	Right-handed alpha
Helix 71	AH8	C	182	197	Right-handed alpha
Helix 72	AH9	C	218	223	Right-handed alpha
Helix 73	AI1	C	227	238	Right-handed alpha
Helix 74	AI2	C	264	272	Right-handed alpha
Helix 75	AI3	C	274	284	Right-handed alpha
Helix 76	AI4	C	298	307	Right-handed alpha
Helix 77	AI5	C	315	329	Right-handed alpha
Helix 78	AI6	C	331	335	Right-handed 310
Helix 79	AI7	C	345	351	Right-handed alpha
Helix 80	AI8	C	355	362	Right-handed alpha
Helix 81	AI9	C	402	409	Right-handed alpha
Helix 82	AJ1	C	415	420	Right-handed alpha
Helix 83	AJ2	C	422	434	Right-handed alpha
Helix 84	AJ3	C	442	461	Right-handed alpha
Helix 85	AJ4	C	477	507	Right-handed alpha
Helix 86	AJ5	C	521	536	Right-handed alpha
Helix 87	AJ6	C	547	561	Right-handed alpha
Helix 88	AJ7	C	562	564	Right-handed 310
Helix 89	AJ8	C	569	573	Right-handed 310
Helix 90	AJ9	C	574	579	Right-handed alpha
Helix 91	AK1	C	579	584	Right-handed alpha
Helix 92	AK2	C	590	607	Right-handed alpha
Helix 93	AK3	C	624	634	Right-handed alpha
Helix 94	AK4	C	652	660	Right-handed alpha
Helix 95	AK5	C	660	665	Right-handed alpha
Helix 96	AK6	C	669	678	Right-handed alpha
Helix 97	AK7	C	679	686	Right-handed alpha
Helix 98	AK8	C	687	707	Right-handed alpha
Helix 99	AK9	C	708	713	Right-handed alpha
Helix 100	AL1	D	119	127	Right-handed alpha
Helix 101	AL2	D	132	148	Right-handed alpha
Helix 102	AL3	D	153	161	Right-handed alpha
Helix 103	AL4	D	170	178	Right-handed alpha
Helix 104	AL5	D	182	197	Right-handed alpha
Helix 105	AL6	D	218	223	Right-handed alpha
Helix 106	AL7	D	227	238	Right-handed alpha
Helix 107	AL8	D	264	272	Right-handed alpha
Helix 108	AL9	D	274	284	Right-handed alpha
Helix 109	AM1	D	298	307	Right-handed alpha
Helix 110	AM2	D	315	329	Right-handed alpha
Helix 111	AM3	D	331	335	Right-handed 310
Helix 112	AM4	D	345	351	Right-handed alpha
Helix 113	AM5	D	355	362	Right-handed alpha
Helix 114	AM6	D	402	409	Right-handed alpha
Helix 115	AM7	D	415	420	Right-handed alpha
Helix 116	AM8	D	422	434	Right-handed alpha
Helix 117	AM9	D	442	461	Right-handed alpha
Helix 118	AN1	D	477	507	Right-handed alpha
Helix 119	AN2	D	521	536	Right-handed alpha
Helix 120	AN3	D	547	561	Right-handed alpha
Helix 121	AN4	D	562	564	Right-handed 310
Helix 122	AN5	D	569	573	Right-handed 310
Helix 123	AN6	D	574	579	Right-handed alpha
Helix 124	AN7	D	579	584	Right-handed alpha
Helix 125	AN8	D	590	607	Right-handed alpha
Helix 126	AN9	D	624	634	Right-handed alpha
Helix 127	AO1	D	652	660	Right-handed alpha
Helix 128	AO2	D	660	665	Right-handed alpha
Helix 129	AO3	D	669	678	Right-handed alpha
Helix 130	AO4	D	679	686	Right-handed alpha
Helix 131	AO5	D	687	707	Right-handed alpha
Helix 132	AO6	D	708	713	Right-handed alpha

There are 4 sheets in PDB entry 13LO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	382	first strand
Strand 2	A	385	391	anti-parallel
Strand 3	A	730	736	anti-parallel
Strand 4	A	719	720	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	382	first strand
Strand 2	B	385	391	anti-parallel
Strand 3	B	730	736	anti-parallel
Strand 4	B	719	720	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	377	382	first strand
Strand 2	C	385	391	anti-parallel
Strand 3	C	730	736	anti-parallel
Strand 4	C	719	720	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	377	382	first strand
Strand 2	D	385	391	anti-parallel
Strand 3	D	730	736	anti-parallel
Strand 4	D	719	720	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 13LO

Analysis of interatomic Contacts of Structural Units in PDB entry:
13LO