Analysis of interatomic Contacts of Structural Units in PDB entry:
13LQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 13LQ entry

There are 4 chains in PDB entry 13LQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 62SER 747
B
 PRO 62SER 747
C
 PRO 62SER 747
D
 PRO 62SER 747
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are128 helices in PDB entry 13LQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
119 130Right-handed alpha
Helix 2
AA2
A
133 146Right-handed alpha
Helix 3
AA3
A
154 163Right-handed alpha
Helix 4
AA4
A
170 178Right-handed alpha
Helix 5
AA5
A
182 196Right-handed alpha
Helix 6
AA6
A
199 205Right-handed alpha
Helix 7
AA7
A
210 214Right-handed 310
Helix 8
AA8
A
217 225Right-handed alpha
Helix 9
AA9
A
228 238Right-handed alpha
Helix 10
AB1
A
264 272Right-handed alpha
Helix 11
AB2
A
274 284Right-handed alpha
Helix 12
AB3
A
298 306Right-handed alpha
Helix 13
AB4
A
315 329Right-handed alpha
Helix 14
AB5
A
330 334Right-handed 310
Helix 15
AB6
A
343 352Right-handed alpha
Helix 16
AB7
A
353 362Right-handed alpha
Helix 17
AB8
A
402 409Right-handed alpha
Helix 18
AB9
A
415 420Right-handed alpha
Helix 19
AC1
A
423 436Right-handed alpha
Helix 20
AC2
A
436 462Right-handed alpha
Helix 21
AC3
A
481 507Right-handed alpha
Helix 22
AC4
A
519 540Right-handed alpha
Helix 23
AC5
A
546 561Right-handed alpha
Helix 24
AC6
A
562 567Right-handed 310
Helix 25
AC7
A
573 586Right-handed alpha
Helix 26
AC8
A
586 608Right-handed alpha
Helix 27
AC9
A
625 635Right-handed alpha
Helix 28
AD1
A
650 667Right-handed alpha
Helix 29
AD2
A
668 686Right-handed alpha
Helix 30
AD3
A
687 706Right-handed alpha
Helix 31
AD4
A
708 713Right-handed alpha
Helix 32
AD5
A
738 747Right-handed alpha
Helix 33
AD6
B
119 130Right-handed alpha
Helix 34
AD7
B
133 146Right-handed alpha
Helix 35
AD8
B
154 163Right-handed alpha
Helix 36
AD9
B
170 178Right-handed alpha
Helix 37
AE1
B
182 196Right-handed alpha
Helix 38
AE2
B
199 205Right-handed alpha
Helix 39
AE3
B
210 214Right-handed 310
Helix 40
AE4
B
217 225Right-handed alpha
Helix 41
AE5
B
228 238Right-handed alpha
Helix 42
AE6
B
264 272Right-handed alpha
Helix 43
AE7
B
274 284Right-handed alpha
Helix 44
AE8
B
298 306Right-handed alpha
Helix 45
AE9
B
315 329Right-handed alpha
Helix 46
AF1
B
330 334Right-handed 310
Helix 47
AF2
B
343 352Right-handed alpha
Helix 48
AF3
B
353 362Right-handed alpha
Helix 49
AF4
B
402 409Right-handed alpha
Helix 50
AF5
B
415 420Right-handed alpha
Helix 51
AF6
B
423 436Right-handed alpha
Helix 52
AF7
B
436 462Right-handed alpha
Helix 53
AF8
B
481 507Right-handed alpha
Helix 54
AF9
B
519 540Right-handed alpha
Helix 55
AG1
B
546 561Right-handed alpha
Helix 56
AG2
B
562 567Right-handed 310
Helix 57
AG3
B
573 586Right-handed alpha
Helix 58
AG4
B
586 608Right-handed alpha
Helix 59
AG5
B
625 635Right-handed alpha
Helix 60
AG6
B
650 667Right-handed alpha
Helix 61
AG7
B
668 686Right-handed alpha
Helix 62
AG8
B
687 706Right-handed alpha
Helix 63
AG9
B
708 713Right-handed alpha
Helix 64
AH1
B
738 747Right-handed alpha
Helix 65
AH2
C
119 130Right-handed alpha
Helix 66
AH3
C
133 146Right-handed alpha
Helix 67
AH4
C
154 163Right-handed alpha
Helix 68
AH5
C
170 178Right-handed alpha
Helix 69
AH6
C
182 196Right-handed alpha
Helix 70
AH7
C
199 205Right-handed alpha
Helix 71
AH8
C
210 214Right-handed 310
Helix 72
AH9
C
217 225Right-handed alpha
Helix 73
AI1
C
228 238Right-handed alpha
Helix 74
AI2
C
264 272Right-handed alpha
Helix 75
AI3
C
274 284Right-handed alpha
Helix 76
AI4
C
298 306Right-handed alpha
Helix 77
AI5
C
315 329Right-handed alpha
Helix 78
AI6
C
330 334Right-handed 310
Helix 79
AI7
C
343 352Right-handed alpha
Helix 80
AI8
C
353 362Right-handed alpha
Helix 81
AI9
C
402 409Right-handed alpha
Helix 82
AJ1
C
415 420Right-handed alpha
Helix 83
AJ2
C
423 436Right-handed alpha
Helix 84
AJ3
C
436 462Right-handed alpha
Helix 85
AJ4
C
481 507Right-handed alpha
Helix 86
AJ5
C
519 540Right-handed alpha
Helix 87
AJ6
C
546 561Right-handed alpha
Helix 88
AJ7
C
562 567Right-handed 310
Helix 89
AJ8
C
573 586Right-handed alpha
Helix 90
AJ9
C
586 608Right-handed alpha
Helix 91
AK1
C
625 635Right-handed alpha
Helix 92
AK2
C
650 667Right-handed alpha
Helix 93
AK3
C
668 686Right-handed alpha
Helix 94
AK4
C
687 706Right-handed alpha
Helix 95
AK5
C
708 713Right-handed alpha
Helix 96
AK6
C
738 747Right-handed alpha
Helix 97
AK7
D
119 130Right-handed alpha
Helix 98
AK8
D
133 146Right-handed alpha
Helix 99
AK9
D
154 163Right-handed alpha
Helix 100
AL1
D
170 178Right-handed alpha
Helix 101
AL2
D
182 196Right-handed alpha
Helix 102
AL3
D
199 205Right-handed alpha
Helix 103
AL4
D
210 214Right-handed 310
Helix 104
AL5
D
217 225Right-handed alpha
Helix 105
AL6
D
228 238Right-handed alpha
Helix 106
AL7
D
264 272Right-handed alpha
Helix 107
AL8
D
274 284Right-handed alpha
Helix 108
AL9
D
298 306Right-handed alpha
Helix 109
AM1
D
315 329Right-handed alpha
Helix 110
AM2
D
330 334Right-handed 310
Helix 111
AM3
D
343 352Right-handed alpha
Helix 112
AM4
D
353 362Right-handed alpha
Helix 113
AM5
D
402 409Right-handed alpha
Helix 114
AM6
D
415 420Right-handed alpha
Helix 115
AM7
D
423 436Right-handed alpha
Helix 116
AM8
D
436 462Right-handed alpha
Helix 117
AM9
D
481 507Right-handed alpha
Helix 118
AN1
D
519 540Right-handed alpha
Helix 119
AN2
D
546 561Right-handed alpha
Helix 120
AN3
D
562 567Right-handed 310
Helix 121
AN4
D
573 586Right-handed alpha
Helix 122
AN5
D
586 608Right-handed alpha
Helix 123
AN6
D
625 635Right-handed alpha
Helix 124
AN7
D
650 667Right-handed alpha
Helix 125
AN8
D
668 686Right-handed alpha
Helix 126
AN9
D
687 706Right-handed alpha
Helix 127
AO1
D
708 713Right-handed alpha
Helix 128
AO2
D
738 747Right-handed alpha
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There are 4 sheets in PDB entry 13LQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 382first strand
Strand 2
A
385 391anti-parallel
Strand 3
A
730 737anti-parallel
Strand 4
A
719 720anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
377 382first strand
Strand 2
B
385 391anti-parallel
Strand 3
B
730 737anti-parallel
Strand 4
B
719 720anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
377 382first strand
Strand 2
C
385 391anti-parallel
Strand 3
C
730 737anti-parallel
Strand 4
C
719 720anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
377 382first strand
Strand 2
D
385 391anti-parallel
Strand 3
D
730 737anti-parallel
Strand 4
D
719 720anti-parallel
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