Analysis of interatomic Contacts of Structural Units in PDB entry:
13LR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 13LR entry

There are 4 chains in PDB entry 13LR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 118	VAL 756
B	ARG 118	VAL 756
C	ARG 118	VAL 756
D	ARG 118	VAL 756

There are124 helices in PDB entry 13LR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	118	130	Right-handed alpha
Helix 2	AA2	A	131	147	Right-handed alpha
Helix 3	AA3	A	153	158	Right-handed alpha
Helix 4	AA4	A	170	178	Right-handed alpha
Helix 5	AA5	A	183	197	Right-handed alpha
Helix 6	AA6	A	199	205	Right-handed alpha
Helix 7	AA7	A	218	223	Right-handed alpha
Helix 8	AA8	A	227	238	Right-handed alpha
Helix 9	AA9	A	264	272	Right-handed alpha
Helix 10	AB1	A	274	283	Right-handed alpha
Helix 11	AB2	A	298	306	Right-handed alpha
Helix 12	AB3	A	315	329	Right-handed alpha
Helix 13	AB4	A	343	351	Right-handed alpha
Helix 14	AB5	A	355	362	Right-handed alpha
Helix 15	AB6	A	402	409	Right-handed alpha
Helix 16	AB7	A	415	420	Right-handed alpha
Helix 17	AB8	A	422	427	Right-handed alpha
Helix 18	AB9	A	431	436	Right-handed alpha
Helix 19	AC1	A	438	443	Right-handed alpha
Helix 20	AC2	A	448	461	Right-handed alpha
Helix 21	AC3	A	481	508	Right-handed alpha
Helix 22	AC4	A	523	539	Right-handed alpha
Helix 23	AC5	A	546	559	Right-handed alpha
Helix 24	AC6	A	560	569	Right-handed 310
Helix 25	AC7	A	572	578	Right-handed alpha
Helix 26	AC8	A	587	608	Right-handed alpha
Helix 27	AC9	A	624	637	Right-handed alpha
Helix 28	AD1	A	650	679	Right-handed alpha
Helix 29	AD2	A	680	684	Right-handed 310
Helix 30	AD3	A	685	707	Right-handed alpha
Helix 31	AD4	A	708	713	Right-handed alpha
Helix 32	AD5	B	119	130	Right-handed alpha
Helix 33	AD6	B	131	147	Right-handed alpha
Helix 34	AD7	B	153	158	Right-handed alpha
Helix 35	AD8	B	170	178	Right-handed alpha
Helix 36	AD9	B	183	197	Right-handed alpha
Helix 37	AE1	B	199	205	Right-handed alpha
Helix 38	AE2	B	218	223	Right-handed alpha
Helix 39	AE3	B	227	238	Right-handed alpha
Helix 40	AE4	B	264	272	Right-handed alpha
Helix 41	AE5	B	274	283	Right-handed alpha
Helix 42	AE6	B	298	306	Right-handed alpha
Helix 43	AE7	B	315	329	Right-handed alpha
Helix 44	AE8	B	343	351	Right-handed alpha
Helix 45	AE9	B	355	362	Right-handed alpha
Helix 46	AF1	B	402	409	Right-handed alpha
Helix 47	AF2	B	415	420	Right-handed alpha
Helix 48	AF3	B	422	427	Right-handed alpha
Helix 49	AF4	B	431	436	Right-handed alpha
Helix 50	AF5	B	438	443	Right-handed alpha
Helix 51	AF6	B	448	461	Right-handed alpha
Helix 52	AF7	B	481	508	Right-handed alpha
Helix 53	AF8	B	523	539	Right-handed alpha
Helix 54	AF9	B	546	559	Right-handed alpha
Helix 55	AG1	B	560	569	Right-handed 310
Helix 56	AG2	B	572	578	Right-handed alpha
Helix 57	AG3	B	587	608	Right-handed alpha
Helix 58	AG4	B	624	637	Right-handed alpha
Helix 59	AG5	B	650	679	Right-handed alpha
Helix 60	AG6	B	680	684	Right-handed 310
Helix 61	AG7	B	685	707	Right-handed alpha
Helix 62	AG8	B	708	713	Right-handed alpha
Helix 63	AG9	C	119	130	Right-handed alpha
Helix 64	AH1	C	131	147	Right-handed alpha
Helix 65	AH2	C	153	158	Right-handed alpha
Helix 66	AH3	C	170	178	Right-handed alpha
Helix 67	AH4	C	183	197	Right-handed alpha
Helix 68	AH5	C	199	205	Right-handed alpha
Helix 69	AH6	C	218	223	Right-handed alpha
Helix 70	AH7	C	227	238	Right-handed alpha
Helix 71	AH8	C	264	272	Right-handed alpha
Helix 72	AH9	C	274	283	Right-handed alpha
Helix 73	AI1	C	298	306	Right-handed alpha
Helix 74	AI2	C	315	329	Right-handed alpha
Helix 75	AI3	C	343	351	Right-handed alpha
Helix 76	AI4	C	355	362	Right-handed alpha
Helix 77	AI5	C	402	409	Right-handed alpha
Helix 78	AI6	C	415	420	Right-handed alpha
Helix 79	AI7	C	422	427	Right-handed alpha
Helix 80	AI8	C	431	436	Right-handed alpha
Helix 81	AI9	C	438	443	Right-handed alpha
Helix 82	AJ1	C	448	461	Right-handed alpha
Helix 83	AJ2	C	481	508	Right-handed alpha
Helix 84	AJ3	C	523	539	Right-handed alpha
Helix 85	AJ4	C	546	559	Right-handed alpha
Helix 86	AJ5	C	560	569	Right-handed 310
Helix 87	AJ6	C	572	578	Right-handed alpha
Helix 88	AJ7	C	587	608	Right-handed alpha
Helix 89	AJ8	C	624	637	Right-handed alpha
Helix 90	AJ9	C	650	679	Right-handed alpha
Helix 91	AK1	C	680	684	Right-handed 310
Helix 92	AK2	C	685	707	Right-handed alpha
Helix 93	AK3	C	708	713	Right-handed alpha
Helix 94	AK4	D	119	130	Right-handed alpha
Helix 95	AK5	D	131	147	Right-handed alpha
Helix 96	AK6	D	153	158	Right-handed alpha
Helix 97	AK7	D	170	178	Right-handed alpha
Helix 98	AK8	D	183	197	Right-handed alpha
Helix 99	AK9	D	199	205	Right-handed alpha
Helix 100	AL1	D	218	223	Right-handed alpha
Helix 101	AL2	D	227	238	Right-handed alpha
Helix 102	AL3	D	264	272	Right-handed alpha
Helix 103	AL4	D	274	283	Right-handed alpha
Helix 104	AL5	D	298	306	Right-handed alpha
Helix 105	AL6	D	315	329	Right-handed alpha
Helix 106	AL7	D	343	351	Right-handed alpha
Helix 107	AL8	D	355	362	Right-handed alpha
Helix 108	AL9	D	402	409	Right-handed alpha
Helix 109	AM1	D	415	420	Right-handed alpha
Helix 110	AM2	D	422	427	Right-handed alpha
Helix 111	AM3	D	431	436	Right-handed alpha
Helix 112	AM4	D	438	443	Right-handed alpha
Helix 113	AM5	D	448	461	Right-handed alpha
Helix 114	AM6	D	481	508	Right-handed alpha
Helix 115	AM7	D	523	539	Right-handed alpha
Helix 116	AM8	D	546	559	Right-handed alpha
Helix 117	AM9	D	560	569	Right-handed 310
Helix 118	AN1	D	572	578	Right-handed alpha
Helix 119	AN2	D	587	608	Right-handed alpha
Helix 120	AN3	D	624	637	Right-handed alpha
Helix 121	AN4	D	650	679	Right-handed alpha
Helix 122	AN5	D	680	684	Right-handed 310
Helix 123	AN6	D	685	707	Right-handed alpha
Helix 124	AN7	D	708	713	Right-handed alpha

There are 8 sheets in PDB entry 13LR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	381	first strand
Strand 2	A	385	389	anti-parallel
Strand 3	A	733	737	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	719	722	first strand
Strand 2	A	728	731	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	381	first strand
Strand 2	B	385	389	anti-parallel
Strand 3	B	733	737	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	719	722	first strand
Strand 2	B	728	731	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	380	381	first strand
Strand 2	C	385	389	anti-parallel
Strand 3	C	733	737	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	719	722	first strand
Strand 2	C	728	731	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	380	381	first strand
Strand 2	D	385	389	anti-parallel
Strand 3	D	733	737	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	719	722	first strand
Strand 2	D	728	731	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 13LR

Analysis of interatomic Contacts of Structural Units in PDB entry:
13LR