Analysis of interatomic Contacts of Structural Units in PDB entry:
13PK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 13PK entry

There are 4 chains in PDB entry 13PK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5LYS 419
B
 GLU 5LYS 419
C
 GLU 5LYS 419
D
 GLU 5LYS 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 87 helices in PDB entry 13PK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 11Right-handed 310
Helix 2
2
A
38 53Right-handed alpha
Helix 3
3
A
71 80Right-handed alpha
Helix 4
4
A
88 90Right-handed 310
Helix 5
5
A
93 103Right-handed alpha
Helix 6
6
A
113 115Right-handed 310
Helix 7
7
A
117 122Right-handed alpha
Helix 8
8
A
134 136Right-handed 310
Helix 9
9
A
138 141Right-handed 310
Helix 10
10
A
145 158Right-handed alpha
Helix 11
11
A
179 184Right-handed alpha
Helix 12
12
A
191 203Right-handed alpha
Helix 13
13
A
220 232Right-handed alpha
Helix 14
14
A
242 251Right-handed 310
Helix 15
15
A
262 277Right-handed 310
Helix 16
16
A
319 331Right-handed alpha
Helix 17
17
A
347 349Right-handed 310
Helix 18
18
A
351 366Right-handed alpha
Helix 19
19
A
376 385Right-handed alpha
Helix 20
20
A
388 390Right-handed 310
Helix 21
21
A
399 404Right-handed alpha
Helix 22
22
A
411 414Right-handed alpha
Helix 23
23
B
9 11Right-handed 310
Helix 24
24
B
38 53Right-handed alpha
Helix 25
25
B
71 80Right-handed alpha
Helix 26
26
B
88 90Right-handed 310
Helix 27
27
B
93 103Right-handed alpha
Helix 28
28
B
113 115Right-handed 310
Helix 29
29
B
117 122Right-handed alpha
Helix 30
30
B
134 136Right-handed 310
Helix 31
31
B
138 141Right-handed 310
Helix 32
32
B
145 158Right-handed alpha
Helix 33
33
B
179 184Right-handed alpha
Helix 34
34
B
191 203Right-handed alpha
Helix 35
35
B
220 231Right-handed alpha
Helix 36
36
B
242 251Right-handed 310
Helix 37
37
B
262 277Right-handed 310
Helix 38
38
B
319 331Right-handed alpha
Helix 39
39
B
347 349Right-handed 310
Helix 40
40
B
351 366Right-handed alpha
Helix 41
41
B
376 385Right-handed alpha
Helix 42
42
B
388 390Right-handed 310
Helix 43
43
B
399 404Right-handed alpha
Helix 44
44
B
411 414Right-handed alpha
Helix 45
45
C
9 11Right-handed 310
Helix 46
46
C
38 53Right-handed alpha
Helix 47
47
C
71 80Right-handed alpha
Helix 48
48
C
88 90Right-handed 310
Helix 49
49
C
93 103Right-handed alpha
Helix 50
50
C
117 122Right-handed alpha
Helix 51
51
C
134 136Right-handed 310
Helix 52
52
C
138 141Right-handed 310
Helix 53
53
C
145 158Right-handed alpha
Helix 54
54
C
175 184Right-handed alpha
Helix 55
55
C
191 203Right-handed alpha
Helix 56
56
C
220 232Right-handed alpha
Helix 57
57
C
242 251Right-handed 310
Helix 58
58
C
262 277Right-handed 310
Helix 59
59
C
319 331Right-handed alpha
Helix 60
60
C
347 349Right-handed 310
Helix 61
61
C
351 366Right-handed alpha
Helix 62
62
C
376 385Right-handed alpha
Helix 63
63
C
388 390Right-handed 310
Helix 64
64
C
399 404Right-handed alpha
Helix 65
65
C
411 414Right-handed alpha
Helix 66
66
D
9 11Right-handed 310
Helix 67
67
D
38 53Right-handed alpha
Helix 68
68
D
71 80Right-handed alpha
Helix 69
69
D
88 90Right-handed 310
Helix 70
70
D
93 103Right-handed alpha
Helix 71
71
D
113 115Right-handed 310
Helix 72
72
D
117 122Right-handed alpha
Helix 73
73
D
134 136Right-handed 310
Helix 74
74
D
138 141Right-handed 310
Helix 75
75
D
145 158Right-handed alpha
Helix 76
76
D
179 184Right-handed alpha
Helix 77
77
D
191 203Right-handed alpha
Helix 78
78
D
220 232Right-handed alpha
Helix 79
79
D
242 251Right-handed 310
Helix 80
80
D
262 277Right-handed 310
Helix 81
81
D
319 331Right-handed alpha
Helix 82
82
D
347 349Right-handed 310
Helix 83
83
D
351 366Right-handed alpha
Helix 84
84
D
376 385Right-handed alpha
Helix 85
85
D
388 390Right-handed 310
Helix 86
86
D
399 404Right-handed alpha
Helix 87
87
D
411 414Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 13PK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 164first strand
Strand 2
A
18 22parallel
Strand 3
A
56 60parallel
Strand 4
A
128 131parallel
Strand 5
A
108 110parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 283first strand
Strand 2
A
236 239parallel
Strand 3
A
211 215parallel
Strand 4
A
334 338parallel
Strand 5
A
370 373parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 164first strand
Strand 2
B
18 22parallel
Strand 3
B
56 60parallel
Strand 4
B
128 131parallel
Strand 5
B
108 110parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 283first strand
Strand 2
B
236 239parallel
Strand 3
B
211 215parallel
Strand 4
B
334 338parallel
Strand 5
B
370 374parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
161 164first strand
Strand 2
C
18 22parallel
Strand 3
C
56 60parallel
Strand 4
C
128 131parallel
Strand 5
C
108 110parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
281 283first strand
Strand 2
C
236 239parallel
Strand 3
C
211 215parallel
Strand 4
C
334 338parallel
Strand 5
C
370 374parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
161 164first strand
Strand 2
D
18 22parallel
Strand 3
D
56 60parallel
Strand 4
D
128 131parallel
Strand 5
D
108 110parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
281 283first strand
Strand 2
D
236 239parallel
Strand 3
D
211 215parallel
Strand 4
D
334 338parallel
Strand 5
D
370 374parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 30first strand
Strand 2
C
33 36anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il