Analysis of interatomic Contacts of Structural Units in PDB entry:
16PK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 16PK entry

There is 1 chain in PDB entry 16PK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5LYS 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 16PK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 11Right-handed 310
Helix 2
2
A
38 52Right-handed alpha
Helix 3
3
A
71 79Right-handed 310
Helix 4
4
A
88 90Right-handed 310
Helix 5
5
A
93 103Right-handed alpha
Helix 6
6
A
117 121Right-handed alpha
Helix 7
7
A
134 136Right-handed 310
Helix 8
8
A
138 141Right-handed 310
Helix 9
9
A
145 158Right-handed alpha
Helix 10
10
A
167 169Right-handed 310
Helix 11
11
A
179 184Right-handed alpha
Helix 12
12
A
191 204Right-handed alpha
Helix 13
13
A
221 233Right-handed 310
Helix 14
14
A
242 251Right-handed 310
Helix 15
15
A
262 277Right-handed 310
Helix 16
16
A
319 331Right-handed alpha
Helix 17
17
A
347 349Right-handed 310
Helix 18
18
A
351 367Right-handed alpha
Helix 19
19
A
376 384Right-handed alpha
Helix 20
20
A
398 405Right-handed alpha
Helix 21
21
A
411 414Right-handed alpha
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There are 3 sheets in PDB entry 16PK. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 165first strand
Strand 2
A
18 23parallel
Strand 3
A
56 60parallel
Strand 4
A
128 131parallel
Strand 5
A
108 110parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 283first strand
Strand 2
A
236 239parallel
Strand 3
A
211 215parallel
Strand 4
A
334 338parallel
Strand 5
A
370 373parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 291first strand
Strand 2
A
313 317anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il