Analysis of interatomic Contacts of Structural Units in PDB entry:
16VP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 16VP entry

There is 1 chain in PDB entry 16VP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 47LEU 402
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 16VP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 69Right-handed alpha
Helix 2
2
A
74 83Right-handed alpha
Helix 3
3
A
96 99Right-handed 310
Helix 4
4
A
103 105Right-handed 310
Helix 5
5
A
109 118Right-handed alpha
Helix 6
6
A
143 197Right-handed 310
Helix 7
7
A
203 247Right-handed alpha
Helix 8
8
A
250 253Right-handed alpha
Helix 9
9
A
264 267Right-handed alpha
Helix 10
10
A
289 302Right-handed alpha
Helix 11
11
A
332 344Right-handed alpha
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There is 1 sheet ( A) in PDB entry 16VP.

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 401first strand
Strand 2
A
256 260anti-parallel
Strand 3
A
279 282parallel
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