Analysis of interatomic Contacts of Structural Units in PDB entry:
1A0F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1A0F entry

There are 2 chains in PDB entry 1A0F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 201
B
 MET 1LYS 201
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1A0F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 20Right-handed 310
Helix 2
2
A
66 80Right-handed alpha
Helix 3
3
A
89 104Right-handed alpha
Helix 4
4
A
106 113Right-handed alpha
Helix 5
5
A
122 139Right-handed alpha
Helix 6
6
A
153 168Right-handed alpha
Helix 7
7
A
176 186Right-handed alpha
Helix 8
8
A
189 197Right-handed alpha
Helix 9
9
B
10 20Right-handed 310
Helix 10
10
B
66 80Right-handed alpha
Helix 11
11
B
89 104Right-handed alpha
Helix 12
12
B
106 113Right-handed alpha
Helix 13
13
B
119 140Right-handed alpha
Helix 14
14
B
153 167Right-handed alpha
Helix 15
15
B
176 186Right-handed alpha
Helix 16
16
B
189 198Right-handed alpha
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There are 2 sheets in PDB entry 1A0F. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 29first strand
Strand 2
A
2 5parallel
Strand 3
A
54 56anti-parallel
Strand 4
A
62 64anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 29first strand
Strand 2
B
2 5parallel
Strand 3
B
54 56anti-parallel
Strand 4
B
62 64anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il