Analysis of interatomic Contacts of Structural Units in PDB entry:
1A2D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1A2D entry

There are 4 chains in PDB entry 1A2D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 1GLU 116
A
 VAL 118ALA 131
B
 CYS 1GLU 116
B
 VAL 118ALA 131
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 1A2D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 23Right-handed alpha
Helix 2
2
A
27 34Right-handed alpha
Helix 3
3
B
16 23Right-handed alpha
Helix 4
4
B
27 33Right-handed alpha
Helix 5
5
B
87 89Right-handed 310
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There are 2 sheets in PDB entry 1A2D. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 65first strand
Strand 2
A
48 54anti-parallel
Strand 3
A
39 45anti-parallel
Strand 4
A
6 14anti-parallel
Strand 5
A
125 130anti-parallel
Strand 6
A
112 116anti-parallel
Strand 7
A
100 109anti-parallel
Strand 8
A
90 97anti-parallel
Strand 9
A
79 87anti-parallel
Strand 10
A
70 73anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 64first strand
Strand 2
B
48 54anti-parallel
Strand 3
B
39 45anti-parallel
Strand 4
B
6 14anti-parallel
Strand 5
B
125 130anti-parallel
Strand 6
B
112 116anti-parallel
Strand 7
B
100 109anti-parallel
Strand 8
B
90 97anti-parallel
Strand 9
B
79 87anti-parallel
Strand 10
B
70 73anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il