Analysis of interatomic Contacts of Structural Units in PDB entry:
1A35


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1A35 entry

There are 7 chains in PDB entry 1A35 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 A 1 A 17
C
 T 20 T 22
D
 A 101 T 106
D
 C 111 C 111
D
 A 113 T 120
D
 T 122 T 122
A
 ILE 215PHE 765
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 1A35. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
251 263Right-handed alpha
Helix 2
2
A
267 269Right-handed 310
Helix 3
3
A
272 285Right-handed alpha
Helix 4
4
A
290 293Right-handed alpha
Helix 5
5
A
303 317Right-handed alpha
Helix 6
6
A
321 338Right-handed alpha
Helix 7
7
A
379 381Right-handed 310
Helix 8
8
A
434 464Right-handed alpha
Helix 9
9
A
472 485Right-handed alpha
Helix 10
10
A
509 511Right-handed 310
Helix 11
11
A
532 534Right-handed 310
Helix 12
12
A
545 555Right-handed alpha
Helix 13
13
A
570 580Right-handed alpha
Helix 14
14
A
586 604Right-handed alpha
Helix 15
15
A
612 629Right-handed alpha
Helix 16
16
A
726 735Right-handed alpha
Helix 17
17
A
740 742Right-handed 310
Helix 18
18
A
746 758Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 1A35. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 222first strand
Strand 2
A
340 343anti-parallel
Strand 3
A
346 349anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 246first strand
Strand 2
A
241 242anti-parallel
Strand 3
A
300 301anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 360first strand
Strand 2
A
373 374anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 405first strand
Strand 2
A
383 385parallel
Strand 3
A
414 417anti-parallel
Strand 4
A
424 427anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 518first strand
Strand 2
A
521 530anti-parallel
Strand 3
A
536 542anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il