Analysis of interatomic Contacts of Structural Units in PDB entry:
1ADG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ADG entry

There is 1 chain in PDB entry 1ADG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1PHE 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1ADG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1
A
46 56Right-handed alpha
Helix 2
H12
A
100 105Right-handed alpha
Helix 3
H2
A
165 174Right-handed alpha
Helix 4
HA
A
174 189Right-handed alpha
Helix 5
HB
A
201 216Right-handed alpha
Helix 6
HC
A
225 236Right-handed alpha
Helix 7
HCD
A
249 260Right-handed alpha
Helix 8
HE
A
271 281Right-handed alpha
Helix 9
HS
A
304 311Right-handed 310
Helix 10
H3
A
323 339Right-handed alpha
Helix 11
H34
A
342 346Right-handed alpha
Helix 12
H4
A
354 364Right-handed alpha
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There are 5 sheets in PDB entry 1ADG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 13first strand
Strand 2
A
22 28anti-parallel
Strand 3
A
130 132anti-parallel
Strand 4
A
135 136anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
88 91anti-parallel
Strand 3
A
69 76anti-parallel
Strand 4
A
35 45anti-parallel
Strand 5
A
149 153anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
88 91anti-parallel
Strand 3
A
69 76anti-parallel
Strand 4
A
35 45anti-parallel
Strand 5
A
369 373anti-parallel
Strand 6
A
346 351parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
138 139parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 241first strand
Strand 2
A
216 222parallel
Strand 3
A
192 198parallel
Strand 4
A
264 267parallel
Strand 5
A
288 291parallel
Strand 6
A
313 316parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il