Analysis of interatomic Contacts of Structural Units in PDB entry:
1ADJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ADJ entry

There are 4 chains in PDB entry 1ADJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2GLY 421
B
 THR 2GLY 421
C
 THR 2GLY 421
D
 THR 2GLY 421
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 1ADJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 33Right-handed alpha
Helix 2
2
A
47 54Right-handed alpha
Helix 3
3
A
59 63Right-handed alpha
Helix 4
4
A
83 92Right-handed alpha
Helix 5
5
A
95 97Right-handed 310
Helix 6
6
A
137 154Right-handed alpha
Helix 7
7
A
169 189Right-handed alpha
Helix 8
8
A
192 197Right-handed alpha
Helix 9
9
A
202 205Right-handed 310
Helix 10
10
A
211 220Right-handed alpha
Helix 11
11
A
225 228Right-handed 310
Helix 12
12
A
231 246Right-handed alpha
Helix 13
13
A
291 294Right-handed alpha
Helix 14
14
A
309 318Right-handed alpha
Helix 15
15
A
338 351Right-handed alpha
Helix 16
16
A
366 375Right-handed alpha
Helix 17
17
A
386 391Right-handed alpha
Helix 18
18
A
409 420Right-handed alpha
Helix 19
19
B
14 34Right-handed alpha
Helix 20
20
B
47 54Right-handed alpha
Helix 21
21
B
59 63Right-handed alpha
Helix 22
22
B
83 92Right-handed alpha
Helix 23
23
B
95 97Right-handed 310
Helix 24
24
B
137 153Right-handed alpha
Helix 25
25
B
169 189Right-handed alpha
Helix 26
26
B
192 197Right-handed alpha
Helix 27
27
B
202 205Right-handed 310
Helix 28
28
B
211 220Right-handed alpha
Helix 29
29
B
225 228Right-handed 310
Helix 30
30
B
231 246Right-handed alpha
Helix 31
31
B
291 294Right-handed alpha
Helix 32
32
B
309 318Right-handed alpha
Helix 33
33
B
338 351Right-handed alpha
Helix 34
34
B
366 376Right-handed alpha
Helix 35
35
B
386 391Right-handed alpha
Helix 36
36
B
409 420Right-handed alpha
Helix 37
37
C
14 33Right-handed alpha
Helix 38
38
C
47 54Right-handed alpha
Helix 39
39
C
59 63Right-handed alpha
Helix 40
40
C
83 92Right-handed alpha
Helix 41
41
C
95 97Right-handed 310
Helix 42
42
C
137 153Right-handed alpha
Helix 43
43
C
169 189Right-handed alpha
Helix 44
44
C
192 197Right-handed alpha
Helix 45
45
C
202 205Right-handed 310
Helix 46
46
C
211 220Right-handed alpha
Helix 47
47
C
225 228Right-handed 310
Helix 48
48
C
231 246Right-handed alpha
Helix 49
49
C
291 294Right-handed alpha
Helix 50
50
C
309 318Right-handed alpha
Helix 51
51
C
338 351Right-handed alpha
Helix 52
52
C
366 375Right-handed alpha
Helix 53
53
C
386 391Right-handed alpha
Helix 54
54
C
409 420Right-handed alpha
Helix 55
55
D
14 34Right-handed alpha
Helix 56
56
D
47 54Right-handed alpha
Helix 57
57
D
59 63Right-handed alpha
Helix 58
58
D
83 92Right-handed alpha
Helix 59
59
D
95 97Right-handed 310
Helix 60
60
D
137 154Right-handed alpha
Helix 61
61
D
169 189Right-handed alpha
Helix 62
62
D
192 197Right-handed alpha
Helix 63
63
D
202 205Right-handed 310
Helix 64
64
D
211 220Right-handed alpha
Helix 65
65
D
225 228Right-handed 310
Helix 66
66
D
231 246Right-handed alpha
Helix 67
67
D
291 294Right-handed alpha
Helix 68
68
D
309 318Right-handed alpha
Helix 69
69
D
338 351Right-handed alpha
Helix 70
70
D
366 376Right-handed alpha
Helix 71
71
D
386 391Right-handed alpha
Helix 72
72
D
409 420Right-handed alpha
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There are 7 sheets in PDB entry 1ADJ. Click on sheet of interest to get list of strands forming it: A, B, C, G, H, I, J,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 253first strand
Strand 2
A
160 165parallel
Strand 3
A
267 272anti-parallel
Strand 4
A
281 287anti-parallel
Strand 5
A
302 308anti-parallel
Strand 6
A
123 132anti-parallel
Strand 7
A
102 111anti-parallel
Strand 8
A
37 40parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
75 78anti-parallel
Strand 3
A
67 69anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 359first strand
Strand 2
A
331 335parallel
Strand 3
A
380 384parallel
Strand 4
A
393 398anti-parallel
Strand 5
A
404 408anti-parallel
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There are 1 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 13first strand
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 253first strand
Strand 2
B
159 165parallel
Strand 3
B
267 273anti-parallel
Strand 4
B
281 287anti-parallel
Strand 5
B
302 308anti-parallel
Strand 6
B
123 132anti-parallel
Strand 7
B
102 111anti-parallel
Strand 8
B
37 40parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
75 78anti-parallel
Strand 3
B
67 69anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 359first strand
Strand 2
B
331 335parallel
Strand 3
B
380 384parallel
Strand 4
B
393 398anti-parallel
Strand 5
B
404 408anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il