Analysis of interatomic Contacts of Structural Units in PDB entry:
1ADV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ADV entry

There are 2 chains in PDB entry 1ADV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 180PHE 529
B
 ALA 180PHE 529
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 1ADV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A1
A
180 194Right-handed alpha
Helix 2
B1
A
199 203Right-handed alpha
Helix 3
C1
A
213 224Right-handed alpha
Helix 4
D1
A
237 256Right-handed alpha
Helix 5
E1
A
362 379Right-handed alpha
Helix 6
F1
A
434 441Right-handed alpha
Helix 7
G1
A
473 490Right-handed alpha
Helix 8
A2
B
180 194Right-handed alpha
Helix 9
B2
B
199 203Right-handed alpha
Helix 10
C2
B
213 224Right-handed alpha
Helix 11
D2
B
237 256Right-handed alpha
Helix 12
E2
B
362 379Right-handed alpha
Helix 13
F2
B
434 441Right-handed alpha
Helix 14
G2
B
473 490Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 1ADV. Click on sheet of interest to get list of strands forming it: 1A, 2A, 3A, 1B, 2B, 3B,

There are 2 strands in 1A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 271first strand
Strand 2
A
390 393anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in 2A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 293first strand
Strand 2
A
336 338anti-parallel
Strand 3
A
357 359anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in 3A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 419first strand
Strand 2
A
444 448anti-parallel
Strand 3
A
471 472anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in 1B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 271first strand
Strand 2
B
390 393anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in 2B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 292first strand
Strand 2
B
336 338anti-parallel
Strand 3
B
357 359anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in 3B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
415 419first strand
Strand 2
B
444 448anti-parallel
Strand 3
B
471 472anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il