Analysis of interatomic Contacts of Structural Units in PDB entry:
1AE9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AE9 entry

There are 2 chains in PDB entry 1AE9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 177ILE 355
B
 ARG 177ILE 355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 1AE9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
182 194Right-handed alpha
Helix 2
2
A
198 209Right-handed alpha
Helix 3
3
A
213 218Right-handed alpha
Helix 4
4
A
255 265Right-handed alpha
Helix 5
5
A
282 296Right-handed alpha
Helix 6
6
A
309 321Right-handed 310
Helix 7
7
A
324 331Right-handed alpha
Helix 8
8
B
182 194Right-handed alpha
Helix 9
9
B
198 209Right-handed alpha
Helix 10
10
B
213 218Right-handed alpha
Helix 11
11
B
255 265Right-handed alpha
Helix 12
12
B
282 296Right-handed alpha
Helix 13
13
B
309 321Right-handed 310
Helix 14
14
B
324 331Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 1AE9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
228 232anti-parallel
Strand 3
A
239 243anti-parallel
Strand 4
A
349 352parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 248first strand
Strand 2
A
253 255anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 344first strand
Strand 2
A
349 352anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 225first strand
Strand 2
B
228 232anti-parallel
Strand 3
B
239 243anti-parallel
Strand 4
B
351 352parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 248first strand
Strand 2
B
253 255anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il