Analysis of interatomic Contacts of Structural Units in PDB entry:
1AF6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AF6 entry

There are 3 chains in PDB entry 1AF6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1TRP 421
B
 VAL 1TRP 421
C
 VAL 1TRP 421
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 1AF6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
113 116Right-handed 310
Helix 2
2
A
159 163Right-handed 310
Helix 3
3
A
238 240Right-handed 310
Helix 4
4
A
397 401Right-handed 310
Helix 5
5
B
113 116Right-handed 310
Helix 6
6
B
159 163Right-handed 310
Helix 7
7
B
238 240Right-handed 310
Helix 8
8
B
397 401Right-handed 310
Helix 9
9
C
113 116Right-handed 310
Helix 10
10
C
159 163Right-handed 310
Helix 11
11
C
238 240Right-handed 310
Helix 12
12
C
397 401Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 1AF6. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 19 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 14first strand
Strand 2
A
40 53anti-parallel
Strand 3
A
56 68anti-parallel
Strand 4
A
80 89anti-parallel
Strand 5
A
99 105anti-parallel
Strand 6
A
124 132anti-parallel
Strand 7
A
138 148anti-parallel
Strand 8
A
167 179anti-parallel
Strand 9
A
186 196anti-parallel
Strand 10
A
211 223anti-parallel
Strand 11
A
226 236anti-parallel
Strand 12
A
267 280anti-parallel
Strand 13
A
284 296anti-parallel
Strand 14
A
303 316anti-parallel
Strand 15
A
320 333anti-parallel
Strand 16
A
339 352anti-parallel
Strand 17
A
362 373anti-parallel
Strand 18
A
408 421anti-parallel
Strand 19
A
2 14anti-parallel
Back to list of sheets
Back to top of page

There are 19 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 14first strand
Strand 2
B
40 53anti-parallel
Strand 3
B
56 68anti-parallel
Strand 4
B
80 89anti-parallel
Strand 5
B
99 105anti-parallel
Strand 6
B
124 132anti-parallel
Strand 7
B
138 148anti-parallel
Strand 8
B
167 179anti-parallel
Strand 9
B
186 196anti-parallel
Strand 10
B
211 223anti-parallel
Strand 11
B
226 236anti-parallel
Strand 12
B
267 280anti-parallel
Strand 13
B
284 296anti-parallel
Strand 14
B
303 316anti-parallel
Strand 15
B
320 333anti-parallel
Strand 16
B
339 352anti-parallel
Strand 17
B
362 373anti-parallel
Strand 18
B
408 421anti-parallel
Strand 19
B
2 14anti-parallel
Back to list of sheets
Back to top of page

There are 19 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 14first strand
Strand 2
C
40 53anti-parallel
Strand 3
C
56 68anti-parallel
Strand 4
C
80 89anti-parallel
Strand 5
C
99 105anti-parallel
Strand 6
C
124 132anti-parallel
Strand 7
C
138 148anti-parallel
Strand 8
C
167 179anti-parallel
Strand 9
C
186 196anti-parallel
Strand 10
C
211 223anti-parallel
Strand 11
C
226 236anti-parallel
Strand 12
C
267 280anti-parallel
Strand 13
C
284 296anti-parallel
Strand 14
C
303 316anti-parallel
Strand 15
C
320 333anti-parallel
Strand 16
C
339 352anti-parallel
Strand 17
C
362 373anti-parallel
Strand 18
C
408 421anti-parallel
Strand 19
C
2 14anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il