Analysis of interatomic Contacts of Structural Units in PDB entry:
1AFR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AFR entry

There are 6 chains in PDB entry 1AFR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 19LEU 363
B
 MET 19LEU 363
C
 MET 19LEU 363
D
 MET 19LEU 363
E
 MET 19LEU 363
F
 MET 19LEU 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are100 helices in PDB entry 1AFR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 50Right-handed 310
Helix 2
2
A
52 54Right-handed 310
Helix 3
3
A
58 60Right-handed 310
Helix 4
4
A
64 67Right-handed 310
Helix 5
5
A
76 89Right-handed alpha
Helix 6
6
A
92 117Right-handed alpha
Helix 7
7
A
131 157Right-handed alpha
Helix 8
8
A
162 175Right-handed alpha
Helix 9
9
A
185 212Right-handed alpha
Helix 10
10
A
216 246Right-handed alpha
Helix 11
11
A
248 261Right-handed alpha
Helix 12
12
A
278 289Right-handed alpha
Helix 13
13
A
294 308Right-handed alpha
Helix 14
14
A
310 312Right-handed 310
Helix 15
15
A
318 339Right-handed alpha
Helix 16
16
A
343 346Right-handed alpha
Helix 17
17
A
354 356Right-handed 310
Helix 18
18
B
36 42Right-handed 310
Helix 19
19
B
44 50Right-handed alpha
Helix 20
20
B
52 54Right-handed 310
Helix 21
21
B
58 60Right-handed 310
Helix 22
22
B
64 67Right-handed 310
Helix 23
23
B
76 89Right-handed alpha
Helix 24
24
B
92 117Right-handed alpha
Helix 25
25
B
131 157Right-handed alpha
Helix 26
26
B
162 175Right-handed alpha
Helix 27
27
B
185 213Right-handed alpha
Helix 28
28
B
216 246Right-handed alpha
Helix 29
29
B
248 261Right-handed alpha
Helix 30
30
B
278 289Right-handed alpha
Helix 31
31
B
294 307Right-handed alpha
Helix 32
32
B
310 312Right-handed 310
Helix 33
33
B
318 338Right-handed alpha
Helix 34
34
B
354 356Right-handed 310
Helix 35
35
C
34 42Right-handed 310
Helix 36
36
C
44 50Right-handed alpha
Helix 37
37
C
52 54Right-handed 310
Helix 38
38
C
58 60Right-handed 310
Helix 39
39
C
64 67Right-handed 310
Helix 40
40
C
76 89Right-handed alpha
Helix 41
41
C
92 117Right-handed alpha
Helix 42
42
C
131 157Right-handed alpha
Helix 43
43
C
162 175Right-handed alpha
Helix 44
44
C
185 213Right-handed alpha
Helix 45
45
C
216 246Right-handed alpha
Helix 46
46
C
248 261Right-handed alpha
Helix 47
47
C
278 289Right-handed alpha
Helix 48
48
C
294 307Right-handed alpha
Helix 49
49
C
310 312Right-handed 310
Helix 50
50
C
318 338Right-handed alpha
Helix 51
51
C
354 356Right-handed 310
Helix 52
52
D
34 50Right-handed 310
Helix 53
53
D
52 54Right-handed 310
Helix 54
54
D
58 60Right-handed 310
Helix 55
55
D
64 67Right-handed 310
Helix 56
56
D
76 89Right-handed alpha
Helix 57
57
D
92 117Right-handed alpha
Helix 58
58
D
131 157Right-handed alpha
Helix 59
59
D
162 175Right-handed alpha
Helix 60
60
D
185 213Right-handed alpha
Helix 61
61
D
216 246Right-handed alpha
Helix 62
62
D
248 261Right-handed alpha
Helix 63
63
D
278 289Right-handed alpha
Helix 64
64
D
294 308Right-handed alpha
Helix 65
65
D
310 312Right-handed 310
Helix 66
66
D
318 339Right-handed alpha
Helix 67
67
D
354 356Right-handed 310
Helix 68
68
E
34 50Right-handed 310
Helix 69
69
E
52 54Right-handed 310
Helix 70
70
E
58 60Right-handed 310
Helix 71
71
E
64 67Right-handed 310
Helix 72
72
E
76 89Right-handed alpha
Helix 73
73
E
92 117Right-handed alpha
Helix 74
74
E
131 157Right-handed alpha
Helix 75
75
E
162 175Right-handed alpha
Helix 76
76
E
185 212Right-handed alpha
Helix 77
77
E
216 246Right-handed alpha
Helix 78
78
E
250 261Right-handed alpha
Helix 79
79
E
278 289Right-handed alpha
Helix 80
80
E
294 307Right-handed alpha
Helix 81
81
E
318 337Right-handed alpha
Helix 82
82
E
343 346Right-handed alpha
Helix 83
83
E
354 356Right-handed 310
Helix 84
84
F
34 50Right-handed 310
Helix 85
85
F
52 54Right-handed 310
Helix 86
86
F
58 60Right-handed 310
Helix 87
87
F
64 67Right-handed 310
Helix 88
88
F
76 89Right-handed alpha
Helix 89
89
F
92 117Right-handed alpha
Helix 90
90
F
131 157Right-handed alpha
Helix 91
91
F
162 175Right-handed alpha
Helix 92
92
F
185 212Right-handed alpha
Helix 93
93
F
216 246Right-handed alpha
Helix 94
94
F
248 261Right-handed alpha
Helix 95
95
F
278 289Right-handed alpha
Helix 96
96
F
294 308Right-handed alpha
Helix 97
97
F
310 312Right-handed 310
Helix 98
98
F
318 339Right-handed alpha
Helix 99
99
F
342 346Right-handed alpha
Helix 100
100
F
354 356Right-handed 310
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There are 6 sheets in PDB entry 1AFR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 353first strand
Strand 2
A
359 362anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 353first strand
Strand 2
B
359 362anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
350 353first strand
Strand 2
C
359 362anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
350 353first strand
Strand 2
D
359 362anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
350 353first strand
Strand 2
E
359 362anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
350 353first strand
Strand 2
F
359 362anti-parallel
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